RetrogeneDB ID:
retro_ecab_663
Organism:
Horse ( Equus_caballus )
Location:
26:4234366-4234799 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.55 %
Coverage:
72.36 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_663
TTATTCAAAGAAATAATAGCTGGGAACATCCAAAACCTGGGGAAGAAACTGGACATGCAA
ATACAGGAAGCTAATAGAACTCCTTAATATTTCAATGTAAAAATACCTTCTCCAAGGCAT
AATATATTAAAACTATCAAAACTTGATGACGAAAGAAAAAGGATATTAAGGGTCACAATA
AAGAAGACAATAACCTACAAAGGAATGCCTATCGGGCTTTCAGGAGATTTCTCAGCAGAA
AACCCACAGGCTAGGAGAGAATGGAATGATATTCAAAATACTGAAAGACAAAAACTATCA
ACCAAGAATACTCTATCCAGTGAAATTATCCTTCATATACGTTGGAGAAATAAAAGTTTT
CCCAGACAAACAAAAACTGAGGGGGTCCACTGCCACTACACTTACCTTACAAGAAATATT
GAAAAGAACCCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LFKEIITENFLNLGKGLEIQVKEANRTPNYINVERPSPRHILVKLAKLVMKEYIMAEAARQKKITYKGSPIRLSADFS-QTVQTRREWNDIIKILKYKNY
LFKEII..N..NLGK.L..Q..EANRTP.Y.NV..PSPRH...KL.KL.............K.ITYKG.PI.LS.DFS.Q......E...I.KILK.KNY
Retrocopy
LFKEIIAGNIQNLGKKLDMQIQEANRTP*YFNVKIPSPRHNILKLSKLDDERKRILRVTIKKTITYKGMPIGLSGDFS\QKTHRLGENGMIFKILKDKNY


Parental protein
PPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQEMMKTAL
.PRILYPVKLSF.Y..EIK.F.DKQKLR....T...LQE..K..L
Retrocopy
QPRILYPVKLSFIYVGEIKVFPDKQKLRGSTATTLTLQEILKRTL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide