RetrogeneDB ID:
retro_ecab_665
Organism:
Horse ( Equus_caballus )
Location:
26:22034730-22035311 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.35 %
Coverage:
60.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
MRPL1
Parental gene aliases:
No gene alias available
Parental gene description:
mitochondrial ribosomal protein L1 [Source:HGNC Symbol;Acc:14275]

Genomic region (view in browser)





>retro_ecab_665
AAGTCATATCACTATATGGAAAATGATCCTGAGGATGTCAATTTAAAACACTTGTACCTG
TGGCAGATATATGAGGTGAAGAAATCTATTCACATACTTAAAAATTTTCAAATTCTGGAC
TTTGTTAATCCAAAACAAGATGTTTATCTTGATTTGACACTGAATATTTCACTTGAGAAA
AAGATAAAAGTGGAGCCATTTGCCACTGTTCTTAGTTTTCCATATCCATTCACATCAGAA
ATCAATAAAGTTGCTGCATCTAAAGGAAATGCATCAGAGATTAAAACAGCAGAAGAAAAC
AGAGGTGCCTTTGCAGAAAGAACTAATCTGATTCAGAGGATTTTGCATGATGAAATTCAT
GTAGACGTTTATGTATCTGTTTAGAAATAACGTCAGAGATTAATCCATTAGAAAAGAAAC
TGATAAAAGATTTTTCAAAATTTATTCAAAATTCCTTTGACCTTGACATTCACCAAATGC
TAGAATTGTTTAAAACTGGGCGTGAAATTAAGGTATATGAAGAAAGGGAGAACTTTCTAG
AAACCAAAATAGCAACATTGGATCAAGTGACCAGACAGCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KSYPFMEGEPEDDVYLKHLYPRQIYDVEKAIHLLKKFQILDFTNPKQGVYLDLTLDMALGKKKKVEPFASVLSFPYPFISEINKVAVFTRNASEIKVAEE
KSY..ME..PED.V.LKHLY..QIY.V.K.IH.LK.FQILDF.NPKQ.VYLDLTL...L.KK.KVEPFA.VLSFPYPF.SEINKVA....NASEIK.AEE
Retrocopy
KSYHYMENDPED-VNLKHLYLWQIYEVKKSIHILKNFQILDFVNPKQDVYLDLTLNISLEKKIKVEPFATVLSFPYPFTSEINKVAASKGNASEIKTAEE


Parental protein
NGAAIAGGTDVIQKILDDEIQLDFYVAV-PEIMPELNPLKKKLKKRFPKLAQNSIGRDIPKMLELFKTGHEIKVDEERENFLKTKIATLDMSSDQI
N..A.A..T..IQ.IL.DEI..D.YV.V..EI..E.NPL.KKL.K.F.K..QNS...DI..MLELFKTG.EIKV.EERENFL.TKIATLD....Q.
Retrocopy
NRGAFAERTNLIQRILHDEIHVDVYVSV/LEITSEINPLEKKLIKDFSKFIQNSFDLDIHQMLELFKTGREIKVYEERENFLETKIATLDQVTRQL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide