RetrogeneDB ID:
retro_ecab_666
Organism:
Horse ( Equus_caballus )
Location:
26:26266262-26266560 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.86 %
Coverage:
60.61 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_666
ATTCCAGTGAGACTGATCCATCAGAATGGAAAGACCCAGAATGAGGTAGCACCTTCCTCC
TCTTCCCCCATCATCAAAGCCCTTGGGGAGTCACCCAGAGATAGAAAAGAGCCGTTACAC
ATGAAACACAATGGAAATATTGCCTTTTATGATCTTGTCAAGAGCACCTGACAGATGAAG
CGTAGATCTTTATCCAGAGAATTCTCCAGCGTCATTAAGCAATCCTGGGGACTGCCCAGT
GTGTGGGCTGCAATGCCAATGGCTGCATCCTCATGACATCCAAGATGACATCAACAGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKE-ILGTAQSVGCNVDG-RHPHDVIDDI
I.V.L..QN...Q.EV.PS.S..IIKAL.E.PRDRK.....KH.GNI.F...V....QM..RSL.RE.S..IK..ILGTAQ.VGCN..G..HPHD..DDI
Retrocopy
IPVRLIHQNGKTQNEVAPSSSSPIIKALGESPRDRKEPLHMKHNGNIAFYDLVKST*QMKRRSLSREFSSVIKQ/ILGTAQCVGCNANG/LHPHDIQDDI


Parental protein
NN
N.
Retrocopy
NS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide