RetrogeneDB ID:
retro_ecab_668
Organism:
Horse ( Equus_caballus )
Location:
27:621463-622180 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.08 %
Coverage:
67.12 %
Frameshifts:
11
Stop codons:
3


Parental gene:
Parental gene symbol:
MAP2K2
Parental gene aliases:
No gene alias available
Parental gene description:
mitogen-activated protein kinase kinase 2 [Source:HGNC Symbol;Acc:6842]

Genomic region (view in browser)





>retro_ecab_668
TCTCTGGACCAGGCATTGAAGGAAGCCAAGAGAATTCCCAAGAGATTCTGGGGAAGCTCC
ACATTGCAATTCCCTGAGGCTTGGGGTATCCCCAAGAAAAGCACCCCAATCATGCACCAA
GATGTGAAATCTTCTAACAGCCTCGTCAACTGCAGAGGGGAGATCAAGCTGTGAAATTTT
GGGGTGAATGGGCAGCTCGACTCCACAGCCAACCCCTTTGTAGGAACTCATTCCTACACA
TCTCTGAGCAGTTGCAAGACACTCACTGCTTGGTGCAGTCAGGCATCGGGAGCACGGCCT
GTCCCTCAGAAGCTGTCCGTGGGAAGGTACCCCATCCCTTTCCTGATGCCAAGGAGCTGA
GGCCGTATCTGGCTGGGCCATGGTCGGGGGAGTGGAAGGAGAGCCTCCTAGCATCTTCCG
AAGACCAAGAGCACCTGGACACCCCACAGTGGCCACAGATGGATAGTTGGCCAGCTCTGG
CCGTCTTGGAACTGCCGGATGGTATTGTGAAGGAGCTTCTTTCCAAGCTGCCACCAGCAC
CTTCACTCAGGACCTCAAGGAGTTTCAAATAAATGCCTAATTGAGAACCCAGCACATCTG
AAGATGCTCATGAGCCAGGCTTTATCAAATGGTACAAATGGTTGAAGTGTATTTGTCAGC
TGGTTGTGTAAAATGCTGCCACTGAACCAGCCTGGCACACCCATGTGCACCTCCATG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SLDQVLKEAKRIP-EEILGKVSIAVLRGLAYLREKH-QIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMS-PERLQGTHYSVQSDI
SLDQ.LKEAKRIP..EILGK..IA...GL.Y..EKH..IMH.DVK.SN.LVN.RGEIKL..FGV.GQL.DS.AN.FVGT.SY.S..E.LQ.TH..VQS.I
Retrocopy
SLDQALKEAKRIP/QEILGKLHIAIP*GLGYPQEKH\PIMHQDVKSSNSLVNCRGEIKL*NFGVNGQL-DSTANPFVGTHSYTS/SEQLQDTHCLVQSGI


Parental protein
WSM-GLSL-VELSVGRYPI-PPPDAKEL-EAIFGRPVVDGAEDEPPSTSPRPRPPGRAI-SGH-GMDSRPAMAIFELLDYIVNEPPHKLP-HGAFTQDFQ
.S..GLSL...LSVGRYPI.P.PDAKEL.EA..G...V.G.E.EPPS...RPR.PG....SGH..MDS.PA.A..EL.D.IV.E...KLP....FTQD..
Retrocopy
GST/GLSL/QKLSVGRYPI/PFPDAKEL/EAVSGWAMVGGVEGEPPSIFRRPRAPGHPT/SGH/QMDSWPALAVLELPDGIVKELLSKLP/TSTFTQDLK


Parental protein
EF-VNKCLIKNPAERADLKMLMNHAFIKRSEVEEVDFAGWLCKTLRLNQPSTPTRTAV
EF..NKCLI.NPA....LKMLM..A.........V.F..WLCK.L.LNQP.TP..T..
Retrocopy
EF/SNKCLIENPAH---LKMLMSQALSNGTNG*SV-FVSWLCKMLPLNQPGTPMCTSM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide