RetrogeneDB ID:
retro_ecab_669
Organism:
Horse ( Equus_caballus )
Location:
27:2600323-2600778 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.15 %
Coverage:
85.96 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL11
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L11 [Source:HGNC Symbol;Acc:10301]

Genomic region (view in browser)





>retro_ecab_669
GTGTGGGCGAGTGGAGACAGACTGACCTGGGCAGCGAAGGTGCTGGAGCAGCTCACTGGC
CAGACTCTAGTGTTCTCCAAAGCTAGATACACCAGCAGATCCTTTGGCATCAGAAAAATG
AGAAGATTGGCATCCACTGTGCAGGCCATGGGACAAGGCAGAAGAAATCTTGGAGAAAGG
TCTAAAGGTGTGAGTACAAGTTAAGAAGAAATAACTTCTCAGATACCAGAAACTTGGGTT
TGGAGATTCAGGAACACATCAATCCGGGGATCAAATATGACCCGAGCACTGGTATCTGTG
AGCTGGACTTCTATGTGGTGCTGGGTAGGCCAGGTTTTAGCATTGCAGACAAGAAGTGCA
GGACAGCTGCACTGGAGCCAAACACAGAATCAGCAAAGAGCGAGGCCACGTGCTGGTTCC
AGCGGAGGTATGATGGCATCATCCTTCCTGGCAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRR-NEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIG
V..SGDRLT.AAKVLEQLTGQT.VFSKARYT.RSFGIR..NEKI..HC...G........K.....EY.LR.NNFSDT.N.G..IQEHI..GIKYDPS.G
Retrocopy
VWASGDRLTWAAKVLEQLTGQTLVFSKARYTSRSFGIRK/NEKIGIHCAGHGTRQKKSWRKV*RC-EYKLRRNNFSDTRNLGLEIQEHINPGIKYDPSTG


Parental protein
IYGLDFYVVLGRPGFSIADKKRRT-GCIGAKHRISKE-EAMRWFQQKYDGIILPGK
I..LDFYVVLGRPGFSIADKK.RT..C.GAKHRISKE.EA..WFQ..YDGIILPGK
Retrocopy
ICELDFYVVLGRPGFSIADKKCRT/SCTGAKHRISKE\EATCWFQRRYDGIILPGK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide