RetrogeneDB ID:
retro_ecab_670
Organism:
Horse ( Equus_caballus )
Location:
27:6500913-6501792 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
63.85 %
Coverage:
99.31 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_670
AGGCCAAGGAATACTTGCCAAGCAAGGGAACAGTACAAAACCCCAGAAAAAGGAATAAAT
GCAACAGAAACTAGTGACCCACTCAACAAAGAGTTCAAACAAAATATCATGAGGATGCTC
ACAGATATGCAGAGAAGAATGGATGAACACCGTAAGCACATCAGCAAAGAACTGGAAGAT
ATTTAAAAAAATCAGAAATGAAGAATACAATACTCGAAATGAGAAATTCACTAGAGGGAC
TCAATAGCAGACTAGAGGAAGCAGAAGAACGGATCAGCAAGCTAGATGAAAGACTAGAGG
AAATCACCCAAGCAGAACAGAAAAGAGAAAAAAGAATGAGACAAGGAGAACAGTGTAAGG
GAACTCCGGGACAATATCAGGCATGCTAACCTTCGGATTATAGGGGTCCCACAAGGAGAA
GAGAGAGACAAAGGAGCAGAAAATTTATTTGTAGGAATAATAGAGGAAAATTTTCCTAAC
CTGAGGAAGGAAACAGACACCCAAGTTCAGGAAGCACAGAGAGCTCCAAACAAGATAAGC
CCAAAGAGGCCCACATCAAGACATATTATAATCAAAATGTCCAAAATTAAAGACAGAGAG
AGAATCATAAAAGGAGCAAGAGAAAGTCCACAAGTGACATATAAAGAGAAGCTCATCAGG
CTATCAGCAGACTTCTCGGTCGAGACCCTACAGGCAAGAAGAGTATGGCATGACATATTT
AAAGTGCTAAAAGGAAAAAAGCTACAGCCAAGAATACTCTATCCATCAAGGTTGTCAATC
AGAATGGAAGGAGAGATAAAGAGCTTCTCAGACAAGCAAAACTTAAAGGAGTTTTTCACC
AAGAAACCAGTTCTGCAAGAAATGCTGAAGGGACTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENI-KKQSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERL
R.R.T.Q..EQ.KTPEK..N.TE.S....K.FKQ.....LTD..RRMDEH.....KELE.I..K.SEMKNTI.EM.NSLEGLNSR....EERISKLDERL
Retrocopy
RPRNTCQAREQYKTPEKGINATETSDPLNKEFKQNIMRMLTDMQRRMDEHRKHISKELEDI/LKKSEMKNTILEMRNSLEGLNSRLEEAEERISKLDERL


Parental protein
EEVTQAEQIKEK-MKKTD-SLRDLWDNIKCTKIRITGVPE-EEGDKGAE-IYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGR
EE.TQAEQ..EK.M.....S.R.L.DNI.....RI.GVP..EE.DKGAE......I.ENFP.L.KE.D.QVQEAQ.APN.I.PKR.T.RHII.K.S....
Retrocopy
EEITQAEQKREKRMRQGE\SVRELRDNIRHANLRIIGVPQGEERDKGAENLFVGIIEENFPNLRKETDTQVQEAQRAPNKISPKRPTSRHIIIKMSKI-K


Parental protein
NKERILKAARERQQVTYKGNSIRLSADLSAETLQARRKWHSIFKVLNRKK-PPRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
..ERI.K.ARE..QVTYK...IRLSAD.S.ETLQARR.WH.IFKVL..KK..PRILY..R.S..MEGEIK.F.DKQ.LKEF.TKKP.LQEMLKGLI
Retrocopy
DRERIIKGARESPQVTYKEKLIRLSADFSVETLQARRVWHDIFKVLKGKKLQPRILYPSRLSIRMEGEIKSFSDKQNLKEFFTKKPVLQEMLKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide