RetrogeneDB ID:
retro_ecab_671
Organism:
Horse ( Equus_caballus )
Location:
27:8650047-8650811 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
60.77 %
Coverage:
98.44 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_671
AATATAGAGAAACAATTCAATGAGTTCAGGAGCTACTTCACAAAAGACATTGAAACTATA
AAGAAGAATGAATCAGAAATACTAGAGATGAAAAATACAATGGATCAGATAAAACAAAAT
ATGGATTCCCTGAATGTATGTGTGGACACCATAGAGGAGCAAATCAGCATAATTGAAGAT
AGACAGGTTGAATGGCTCCAGACAGAGGGAGAGAGAGAACTAAGACTAAAAAGAAATGAA
TAAAACCTCTGAGAAATAGCTGACTCAATGAGGAAATGCAACATAAGAATTATAGGTATC
CCCGAAGAGGAAGAAAAGGAGAATGGAGCAGAAAGCGTGCTCAAAGAAATAATAGCAGAG
AACTTCCCAAATCTAGGGAATGAGAGAGAAATGTGTGTGGAGGAAGCTTTCAGATCTCCT
AGATATATCAATGTAAAGACCTACTGCAAGGCATACAGTAGTAAACCTGGCAAAAATGAA
TGACAAAGAAAGAATACTCAGGGCAGCAAGGTAGCAGAAAATAACCTATAAAGGAACACC
TATCAGACTTTCAGCAGATTTCTCTGCAGAAACCTTACAAGATGGAGAGATTGGAATGAC
ATATTCAAAACTTTAAAAGATAAAAATCTTCAGCAAAACTACTCTATCCAGCAAAAATAT
CCTTCAGATATGAGGGAGAAATTAAATCCTTCCCAGACAAATACAAGCTAAGGGACTTCG
TAGCCACGAGACCACCACTACAAAAAATCCTCAAGAAGGCCCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.17
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DLGRRMGELSENINKEVGNIKKNQS---EMKNTILERKISLEGLNSRVDDTEEWMSKLDKRQEEITQAEQIKEKKIQKEGENFQETTDSMRKCNIRIIRI
.......E......K....IKKN.S...EMKNT....K.....LN..VD..EE..S....RQ.E..Q.E...E........N..E..DSMRKCNIRII.I
Retrocopy
NIEKQFNEFRSYFTKDIETIKKNESEILEMKNTMDQIKQNMDSLNVCVDTIEEQISIIEDRQVEWLQTEGERELRLKRNE*NL*EIADSMRKCNIRIIGI


Parental protein
PEGDEKENGTESVLKGIIAENFPDLENETETRVEEAFRSPRYVNVKR-TTARHIVVKLAKLND-ERILRAARQKKITYKGTPLRLSVDFSVETLQ-AWRD
PE..EKENG.ESVLK.IIAENFP.L.NE.E..VEEAFRSPRY.NVK..T.....V..LAK.ND.ERILRAAR..KITYKGTP.RLS.DFS.ETLQ..WRD
Retrocopy
PEEEEKENGAESVLKEIIAENFPNLGNEREMCVEEAFRSPRYINVKT\TARHTVV-NLAKMNDKERILRAAR*QKITYKGTPIRLSADFSAETLQ/RWRD


Parental protein
WNDILKTLKDNNLQ-PRILYPAKISFRYEGE-KSFLDKQKLRDFTAMRPPAPQEILKKAL
WNDI.KTLKD.NLQ....LYPAKISFRYEGE.KSF.DK.KLRDF.A.RPP..Q.ILKKAL
Retrocopy
WNDIFKTLKDKNLQ/AKLLYPAKISFRYEGEIKSFPDKYKLRDFVATRPPL-QKILKKAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide