RetrogeneDB ID:
retro_ecab_672
Organism:
Horse ( Equus_caballus )
Location:
27:11279837-11280150 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.05 %
Coverage:
72.22 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
BUD31
Parental gene aliases:
No gene alias available
Parental gene description:
BUD31 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:29629]

Genomic region (view in browser)





>retro_ecab_672
AGGAAAGAGAAAAGCAGGATCTGTCTGGCCCATCTTGACCATCAGCAATCCTGCTACATC
TTCAAACTGTTTCATAAGCAGAGAGCCATCAGCCGAGAACTGTATGAATATTGCCTGAAA
GAAGGCTACGCAGATCCAAACCTGATTGCCAAGTGGAAAACACGTGGTCATGACAATTTG
TGTTGCCTACAGTGTATTTGGATTCTGGGATGCAAACTTTGGAAGAAATTGCCCCTCCCA
GGTTTCCTAAAGCCAGCAGGAAGCAGGCAGACTGGTGGAGGGTGTGCCCTGTGGTTGCAG
GGGCTGTTCTGGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RKVESLWPIFRIHHQKTRYIFDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTR-DTNFGTNCICRVPKSKLEVGRIIECTHCGC
RK..S........HQ...YIF.LF.K..AISRELYEYC.KEGYAD.NLIAKWK..G..NLCCL.CI....D.NFG.NC...V..S..E.GR..E...CGC
Retrocopy
RKEKSRICLAHLDHQQSCYIFKLFHKQRAISRELYEYCLKEGYADPNLIAKWKTRGHDNLCCLQCIWIL\DANFGRNCPSQVS*SQQEAGRLVEGVPCGC


Parental protein
RGCSG
RGCSG
Retrocopy
RGCSG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide