RetrogeneDB ID:
retro_ecab_675
Organism:
Horse ( Equus_caballus )
Location:
27:24073932-24074605 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
65.5 %
Coverage:
88.24 %
Frameshifts:
4
Stop codons:
2
Parental gene:
Parental gene symbol:
SET
Parental gene aliases:
No gene alias available
Parental gene description:
SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]
Genomic region (view in browser)
>retro_ecab_675
GAAAAAGAACGGCAAGAAGTAGCAGGAAACAATGATGAAATACAAAATGAAACAGACAGA
CTTACTGAACAGGCCAGTGAGGAGATTTTGAAAGTAGAACAGAAATATAACAAACTCCAT
CAACCATTTTTTCACAAGAGGTCAGAATTAATTGCCAAAATCCCATATTATGGCGTAACA
ACCTTTGTCAGCCACCCGCAAGTCTGCACTGCTTGGGGAGGAGGATGAAGAGGTGGTGCA
TTATTCGACCACAGTTGAAGCGACAGAATTTGAAGGTGTAAAATCGGGTTACAGAATAGA
TTTTCATCTTGATGAAAATGTTCACTTCAAAAAATAAAGTTCTCTCCCAAGAATTTTATC
TGAATGAGAGTGACGGTCCATCTTCAAAGCCCACTGAAATCAAAAGGAAATCTGAAAAGG
ATCTGATGGAATATTCAAGTCAAATGCAGAAGAAAGCCAACAGGAAGTAGCAGCAGGGGG
CACCAGAGAGCTTCTCTCCCCGGTTTACTGACCCTTCTGATGTAGGTGCAGATGCTTTAG
GAGAGGTCATCAAAGATGGTATTTGGCCAAATTCACTACGGTACTACTTGGTTCCTGACA
TGTAGAGAAGGAATAAAGGCAAGGCGAAGATAATGGTGCTGAGGCTGAAGAAGAAAAATT
GGAAGATGTTGAT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.4 |
| SRP021940_embryo | 0.36 |
| SRP021940_placental_villous | 0.09 |
| SRP021940_synovial_membrane | 0.26 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
