RetrogeneDB ID:
retro_ecab_675
Organism:
Horse ( Equus_caballus )
Location:
27:24073932-24074605 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
65.5 %
Coverage:
88.24 %
Frameshifts:
4
Stop codons:
2


Parental gene:
Parental gene symbol:
SET
Parental gene aliases:
No gene alias available
Parental gene description:
SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]

Genomic region (view in browser)





>retro_ecab_675
GAAAAAGAACGGCAAGAAGTAGCAGGAAACAATGATGAAATACAAAATGAAACAGACAGA
CTTACTGAACAGGCCAGTGAGGAGATTTTGAAAGTAGAACAGAAATATAACAAACTCCAT
CAACCATTTTTTCACAAGAGGTCAGAATTAATTGCCAAAATCCCATATTATGGCGTAACA
ACCTTTGTCAGCCACCCGCAAGTCTGCACTGCTTGGGGAGGAGGATGAAGAGGTGGTGCA
TTATTCGACCACAGTTGAAGCGACAGAATTTGAAGGTGTAAAATCGGGTTACAGAATAGA
TTTTCATCTTGATGAAAATGTTCACTTCAAAAAATAAAGTTCTCTCCCAAGAATTTTATC
TGAATGAGAGTGACGGTCCATCTTCAAAGCCCACTGAAATCAAAAGGAAATCTGAAAAGG
ATCTGATGGAATATTCAAGTCAAATGCAGAAGAAAGCCAACAGGAAGTAGCAGCAGGGGG
CACCAGAGAGCTTCTCTCCCCGGTTTACTGACCCTTCTGATGTAGGTGCAGATGCTTTAG
GAGAGGTCATCAAAGATGGTATTTGGCCAAATTCACTACGGTACTACTTGGTTCCTGACA
TGTAGAGAAGGAATAAAGGCAAGGCGAAGATAATGGTGCTGAGGCTGAAGAAGAAAAATT
GGAAGATGTTGAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.4
SRP021940_embryo 0.36
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.26
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNF-WVTTFVNHP-QVSALLGEEDEEALHYLTRVEVTEFEDIKSGY
EKE.QE.....DE.QNE.DRL.EQASEEILKVEQKYNKL.QPFF.KRSELIAKIP...W.......P...SALLGEEDEE..HY.T.VE.TEFE..KSGY
Retrocopy
EKERQEVAGNNDEIQNETDRLTEQASEEILKVEQKYNKLHQPFFHKRSELIAKIPYY/WRNNLCQPP/RKSALLGEEDEEVVHYSTTVEATEFEGVKSGY


Parental protein
RIDFYFDENPYFE-NKILSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYL
RIDF..DEN..F..NK.LS.EF.LNES..PSSK.TEIK.KS.KDL...SSQ.Q.KA.RK.Q...PESF...FTD.SD.GAD.LGEVIKD.IWPN.L.YYL
Retrocopy
RIDFHLDENVHFK\NKVLSQEFYLNESDGPSSKPTEIKRKSEKDLMEYSSQMQKKANRK*QQGAPESFSPRFTDPSDVGADALGEVIKDGIWPNSLRYYL


Parental protein
VPDM-DDEEGEGEEDDDDDEEEEGLEDID
VPDM....E....ED.....EEE.LED.D
Retrocopy
VPDM/VEKE*RQGEDNGAEAEEEKLEDVD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide