RetrogeneDB ID:
retro_ecab_676
Organism:
Horse ( Equus_caballus )
Location:
27:32685082-32685309 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.43 %
Coverage:
76.77 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
DPY30
Parental gene aliases:
No gene alias available
Parental gene description:
dpy-30 homolog (C. elegans) [Source:HGNC Symbol;Acc:24590]

Genomic region (view in browser)





>retro_ecab_676
GTTGCAGAAAATCCTTACTCTGAGTACAGCCGCACAGACAATGTCGAGAGGATAGTAGGA
AATGAGAAGGTTAATGCAGAAAAGTCATCAAAACAGAAGGTAGATCACCAGTCTCTGCCA
CCTTGTGCCTGCCTGCACAGACGGTTGACCCTGTCTTATTTCCCAGACTTGCTGTACTTG
TAAAGGAAGGACCACCAAATCTCGTTGAATTTCTAGCATCATCTCTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VAENPHAEYGLTDNVERIVENEKINAEKSSKQKVDLQSLPTRAYLD-QTVVPILLQGLAVLAKERPPNPIEFLASYL
VAENP..EY..TDNVERIV.NEK.NAEKSSKQKVD.QSLP..A.L..QTV.P.L...LAVL.KE.PPN..EFLAS.L
Retrocopy
VAENPYSEYSRTDNVERIVGNEKVNAEKSSKQKVDHQSLPPCACLH/QTVDPVLFPRLAVLVKEGPPNLVEFLASSL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide