RetrogeneDB ID:
retro_ecab_678
Organism:
Horse ( Equus_caballus )
Location:
27:3332056-3332603 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.64 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
6


Parental gene:
Parental gene symbol:
RPL17
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L17 [Source:HGNC Symbol;Acc:10307]

Genomic region (view in browser)





>retro_ecab_678
AAAATGGGTCATTGCTCACTTAACCTGGAAACCCCCATAAAATCATGCAAATCAAGAGGT
TCAAATCTTCGTGTTCACTTCAAGGATACCTGTGAAACTGCCCAGGCCATGTAGGACATG
CGTATCTGAAAAGCCTACTAGTCTCTGAGAGATGCCACTTTACAGAAGCCACGTGTGCCA
TTAGGTGGTTACAATGGTGCCACTGTAGATGTGCCCAGACCCAACAGTGGGGTTGGACAC
AGGGTCAGGGACCCAAAAAGAGTGCTGAATTTTTGTTGCATATACTTAGACACGCAGACA
GTAATGCTGACCTTCAGGATTTAGATGTCAGTTCTCTGGTCAAAGAGCTCACCCAGGCGA
GCAAAGCCTCCAGAATGCACCTGTAGACTTGCAGAGCTCTTGGACCGTATATAACCTCTG
AGTGAGTTCCTCCAGCCGCATTGAGATCACCTTTCCTGAAACAGAATAAATTGTTCCCAA
ACCCGAAGACGAGGTTGCACAGCAGAAAAAGATATCCCAGAAGCAACAAAAGCTTATGGC
TTGGGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVG-RCAQAKQWGWTQGRWPKKSAEFLLHMLKNA
KM...SL..E.P.KSCKSRGSNLRVHFK.T.ETAQA...M.I.KA...L.D.TL.K..VP...YNG....RCAQ..QWGWTQG..PKKSAEFLLH.L..A
Retrocopy
KMGHCSLNLETPIKSCKSRGSNLRVHFKDTCETAQAM*DMRI*KAY*SLRDATLQKPRVPLGGYNGATV/RCAQTQQWGWTQGQGPKKSAEFLLHILRHA


Parental protein
ESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHG-RINPY-MSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE
.SNA.L..LDV.SLV.E..Q..KA..M...T.RA.G.RI.P...SS...IE....E.E.IVPKPE.EVAQ.KKISQK....QKLMA.E
Retrocopy
DSNADLQDLDVSSLVKELTQASKASRMHL*TCRALG\RI*PL\VSSSSRIEITFPETE*IVPKPEDEVAQQKKISQK---QQKLMAWE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide