RetrogeneDB ID:
retro_ecab_679
Organism:
Horse ( Equus_caballus )
Location:
27:11101299-11101788 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.49 %
Coverage:
99.39 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_679
CTGCCTCCACCATGCTGCCCAAGTTCGACCCCAAAGAGATCAAAGTCGTGTACCCAAGGT
GTAGGTGCTATGTCTGCCCTGGCTCCCAAGATTGGTCCCCTGGGTCTGTCTCCAAAAAAG
GTGAGCAATGACATCACCAAGGCAACTGGTGATTGGAAGGGTCTGAGGATCACTGTGAAA
CTGACGTTCCAGAACGGACAGGCTCAGATTGAGGTGGTACCTTCTGCTTCTGCCCTGATC
ATCAAAGCCCTCCAAGAACCACCAAGAAACAGGAAGAAGCAGGAAAACATAAAGCACAGT
GGAAACATCACCTTTGACAAGATTGTCAACATTGCTTGACAGATGCAGCACCGGTCCTTG
GCCACAGAACTCTCCAGAAGCATTAAAGAGATCCTGGGGACTGCCCAGTCTGTGGGCTGC
AATATTGATGGTCGCCACCCTCATGATGTCATCGATGACATCAACAGCGGTGCGGTGGAA
TGCCCAGCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKH
.PP...P.........CT.G.VGA.SALAPKIGPLGLSPKKV..DI.KATGDWKGLRITVKLT.QN.QAQIEVVPSASALIIKAL.EPPR.RKKQ.NIKH
Retrocopy
LPPPCCPSSTPKRSKSCTQG-VGAMSALAPKIGPLGLSPKKVSNDITKATGDWKGLRITVKLTFQNGQAQIEVVPSASALIIKALQEPPRNRKKQENIKH


Parental protein
SGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDVIDDINNGAVECPA
SGNITFD.IVNIA.QM.HRSLA.ELS..IKEILGTAQSVGCN.DGRHPHDVIDDIN.GAVECPA
Retrocopy
SGNITFDKIVNIA*QMQHRSLATELSRSIKEILGTAQSVGCNIDGRHPHDVIDDINSGAVECPA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide