RetrogeneDB ID:
retro_ecab_680
Organism:
Horse ( Equus_caballus )
Location:
27:11727018-11727420 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.68 %
Coverage:
77.71 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
RAN
Parental gene aliases:
No gene alias available
Parental gene description:
RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:9846]

Genomic region (view in browser)





>retro_ecab_680
ATCCAAAGCAAGTGTGCGACTAAAATTTTTGACTTTAACAGCGAGAGTTACAAGTGTGCA
CCTAGGTGGTATAGAGATCTGTTGGGAGTATATGAAAACAACCCCATCATATTGCATGGC
AACATAGTGGATGTTAAGGACTGGAAAAATTTTTAAAAATCCATCATCTTCCAATAAAAG
AAGAATATTTGTAACATGAGATTTCTGCCAGAAGTACCTACTGCTTTGAGAAGCCTGTCT
ATCGGCTTCCTAGGAAAGTAACTGGTGATCCTGACTTGGAGTTTGTTACTGTCCCTGCTC
TTGCCCCACCAGATGTTGTCGTGGACTCAGTTTCAGAAGTTCAATATGAGCATGGCTTAG
AGGTTCTCAGACAATTCTTCTCCCAATGAGAACGATACCCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY-YDISAKSNYNFEKPFLWLARKLIGDPNLEFVAM
IQ..CA...FD..S...YK..P.W.RDL..V.EN.PI.L.GN.VD.KD.K...KSI.F..KKN......ISA.S.Y.FEKP...L.RK..GDP.LEFV..
Retrocopy
IQSKCATKIFDFNSE-SYKCAPRWYRDLLGVYENNPIILHGNIVDVKDWKNF*KSIIFQ*KKNICN/HEISARSTYCFEKPVYRLPRKVTGDPDLEFVTV


Parental protein
PALAPPEVVMDPALAAQYEHDLEV-AQTTAL-PDEDDDL
PALAPP.VV.D.....QYEH.LEV..QT..L.P.E.D.L
Retrocopy
PALAPPDVVVDSVSEVQYEHGLEV/SQTILL/PNENDTL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide