RetrogeneDB ID:
retro_ecab_681
Organism:
Horse ( Equus_caballus )
Location:
27:25227115-25227738 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.24 %
Coverage:
70.13 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_681
AGATCCCATCAGGGCATACGTTTGAAGGATGTGCAATGTTCAATCATAAGTGTGACAAAA
ACTGACAAGCAGGAAGCTTTTGTGCTCAGTGACAGTAGCATGTTTGTCTCTAGGAGATGT
TTCATTTTGAAGACATGTGGTACCACCTTTTTCTGAAAGCACTAGTTCCCCCGTTGAAAC
TTGCTAGGGTTTACAGTGGGTTTGACTCCATTCAAAGCTTCTTTTACTCTCCTAAGCATT
TCATGAAGCCTTCTCACCAAGGGTACCCACATCGGACTTTCCAGGAAGAAATAGTGTTTC
TTAATGCAATTCTCCCAAATGAAACTGTGTATTGTACGAGATGTAGGAATTCTGATTGTC
GGTACTTCTGTACTTTGGTCCTAGAAAGTTGGGTGATGTGTCAGCGGCATCAAACCCTGG
AAATTCTGCTGAGTAAGCTTGACTCAGCAGTTATGGAGCAGTTCTATATGAAAGATGGTA
TTACTGCAAAGGATGTCACTCATGAGAGTGGAATTCGTGACCTGATGCCAGGTTCTGTCA
TTGAGGGCACTCTGTTCAATCCTTGTGGGTGTTCAATGATTGGAAAGAAATCAGAAGGAA
CTTAATAGGCTATTCACATTACG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTT-LLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIE
RS...I.LKDVQCSIISVTKTDKQEA.VLS.SSMFVS.R.FILKTCGTT.L.LKALVP.LKLAR.YSGFDSIQSFFYS.K.FMKPSHQGYPHR.FQEEI.
Retrocopy
RSHQGIRLKDVQCSIISVTKTDKQEAFVLSDSSMFVSRRCFILKTCGTT/LFLKALVPPLKLARVYSGFDSIQSFFYSPKHFMKPSHQGYPHRTFQEEIV


Parental protein
FLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKS
FLNAI.PN...YC....NSDC.Y..TL...ES.V..Q..QTLEIL.S.LD.AVM.QFYMKDG.TAKDVT.ESGIRDL.PGSVI..T.FNPCG.SM.G.KS
Retrocopy
FLNAILPNETVYCTRCRNSDCRYFCTLVL-ESWVMCQRHQTLEILLSKLDSAVMEQFYMKDGITAKDVTHESGIRDLMPGSVIEGTLFNPCGCSMIGKKS


Parental protein
DGTYWTIHIT
.GT...IHIT
Retrocopy
EGT**AIHIT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide