RetrogeneDB ID:
retro_ecab_682
Organism:
Horse ( Equus_caballus )
Location:
27:25445060-25445392 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.91 %
Coverage:
99.12 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_682
ATGGCCAGGCCAGGGGCTGCTTTCCGTCACCTGGGCCCCTTATCCAGAGCTGGGGCCTTG
GGCTCGGCCTGCTGCGGGGCACATGGCGCCCAGTTCCTGGACGCCTATGGGAAGGAGCTC
TTTGGCAAGGCCAACAAACCGTCCTTCCACAGCCTGGCCCTAATGTTAGGGGGGTCCCGT
TACAGAAAGTCCCTGTGGGTCGAGTTACTACCAGCCTCTGGAAGCACCTTATTGTGCACC
AGCTTTTACTGCCAGGCTGAGTGGAGACCCAGTGCCCAGATTGTGGCCCCAGTGGAAGGA
GCCTGCCACTCCTGTGCTGGCTTGCCTTTGCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAGLGATFRRLGALSGAGALGLATYGAHGAQFPDAYGKELFDRVNKHHFLHSLAL-LGVPHCRKPLWAGLLLASGTTLFCTSFYYQALSGDPSIQTLAPV
MA..GA.FR.LG.LS.AGALG.A..GAHGAQF.DAYGKELF...NK..F.HSLAL.LG....RK.LW..LL.ASG.TL.CTSFY.QA....PS.Q..APV
Retrocopy
MARPGAAFRHLGPLSRAGALGSACCGAHGAQFLDAYGKELFGKANKPSF-HSLALMLGGSRYRKSLWVELLPASGSTLLCTSFYCQA-EWRPSAQIVAPV


Parental protein
-GGSLLLLGWLALA
.G.SL.LL.WLA.A
Retrocopy
/GRSLPLLCWLAFA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide