RetrogeneDB ID:
retro_ecab_683
Organism:
Horse ( Equus_caballus )
Location:
28:357121-358089 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
87.61 %
Coverage:
98.8 %
Frameshifts:
3
Stop codons:
3
Parental gene:
Parental gene symbol:
ZDHHC20
Parental gene aliases:
No gene alias available
Parental gene description:
zinc finger, DHHC-type containing 20 [Source:HGNC Symbol;Acc:20749]
Genomic region (view in browser)
>retro_ecab_683
TGCGTGGTTATGCTTTCTTGAAATGGAGAAAACGGAAAGGTCGTTGTTTACCTTGTGGGT
TTCCATCTGTTCTTGTATGTTTGTATAGTCCTATTGGATGACAATTTTTCACATCTCCCG
CTTCCCCCTCCAAAGACTTCTACTTGTCCAGTTCTGAAAAGGAACGTTATGAAAAGGAAT
TCAACCAAGAAAGACAACAAGAAATTTTGAGAAGAGCAGCAAGTGACTTACCCATCTACA
CCCTGTCAGCTGCAAGGACCGTCAGATATTGTGAAAGATGTCAGTTGATTAACATCTGAC
GTGTGCATCACTGCTCAGCATGTGATATATGTGTTCTTAAGATGGATCATCACTGTCCTT
GGGTGAATAACTGTGTGGGATTTTCTAATTATAAATTATTCCTGCTGTTTTTATTATATT
GCCTTTTCATAGCTACAACAGTTTTACAGTGCTTTATAAAATTTTGGACGAATGAACTCT
CAGCTACACGTGCAAAATTCCACGTACTTTTTCTTTTCTTTGTGTTTACAATGTTCTTCA
TCAGCGTCCTGTCGCTGTTCAGCCACCACTGCTGGCTAGTTGGGAAAAATAGAACAATAG
AATCATTCCGTGCACCCACATTTTCCTATGGACCTGATGGAAATGGTTTCTCTCTTGGAT
GCAGTAAAAATTGGAGACAAGTCTTTGGTGATGAAAAGAAATATTGGCTACTTCCAATAT
TTTCAAGTTTGGGTGATGGTTGCAGTTTCCCAACTCTCCTGGTGGGGATGGATCCAGAAC
AAGCTTCTGTTTCAAACCAAAACAAATATGCCAGAAGTATTGGCTCAAATCAACCCTTTC
CTGTCAAACCACTTAGTGAATCGAAAAACCGGTTATTGGACAGTGAGTCTCAGTGGCTAG
AGAACGGATCTGAAAAAAGCACCGTCAGATCAGGGACAAATAACCATGTTACAGTGGCAA
TAGAAAAT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.05 |
| SRP021940_embryo | 0.02 |
| SRP021940_placental_villous | 0.13 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.3 |
Parental protein coverage
Changes in the retrocopy sequence
