RetrogeneDB ID:
retro_ecab_684
Organism:
Horse ( Equus_caballus )
Location:
28:4583073-4583505 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.49 %
Coverage:
99.33 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
C6orf52
Parental gene aliases:
No gene alias available
Parental gene description:
chromosome 6 open reading frame 52 [Source:HGNC Symbol;Acc:20881]

Genomic region (view in browser)





>retro_ecab_684
GCTGGACAGGAGAGTTCGCAGGTTTTGGCATGGCCCACAAAATGGTTACTACTGGTACCA
GCAAAGGGTGAAGCTGGAGTTCCAGCCCTGTTAGCGTTACCTCTTTGGCAACTGCTACGA
GCATGTGCAAGGCTGTGGCTCTCTTTCTGGCTACAGCTGCGGCTGTGCAGCTTGTGGAAA
TGGACACCACCTTCCTTCTGCCCGTGAGGCCAGGGGACACCCAGCTGCAACACTGGTTAC
ACCTGAGGAAACCACAGTTCTGGCCAGAAGTCAAGACGAAGCCCCTCTGGAAGATCCAAA
TCTTCATTTGAATCTTGATCAATGAAACAAAGAGCTTACAGTGAAAAGTGAAGAACTCTA
TGGCTGCCTCATGAATTGCCACTGGCAGCTCTGGACACAGTTCACTCTCAAATCCCAGAT
GAGACCCCAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AGQES-FAHFGIAQ-QNNYYWYWQSRNHPYLVKPEFQPSQGYPFGHWSEHQHSCCSLPDYSSGCAVVGSGHSCLSVCATSGHPAETLVTQEETTSLAENR
AGQES.FA.FG.A..QN.Y..YW........VK.EFQP...Y.FG...EH...C.SL..YS.GCA..G.GH...S.....GHPA.TLVT.EETT.LA...
Retrocopy
AGQES/FAGFGMAH/QNGY--YWYQQR----VKLEFQPC*RYLFGNCYEHVQGCGSLSGYSCGCAACGNGHHLPSAREARGHPAATLVTPEETTVLARSQ


Parental protein
DEDPIADPNLHLNIEE--KEFMMKSEELYDSLMNCHWQ-PSDTVHSKIPDESSK
DE.P..DPNLHLN.....KE...KSEELY..LMNCHWQ...DTVHS.IPDE..K
Retrocopy
DEAPLEDPNLHLNLDQ*NKELTVKSEELYGCLMNCHWQ/ALDTVHSQIPDETPK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide