RetrogeneDB ID:
retro_ecab_685
Organism:
Horse ( Equus_caballus )
Location:
28:12642584-12642925 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.83 %
Coverage:
88.37 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
CNIH
Parental gene aliases:
No gene alias available
Parental gene description:
cornichon homolog (Drosophila) [Source:HGNC Symbol;Acc:19431]

Genomic region (view in browser)





>retro_ecab_685
TTTGATGACCTGAAGATTGATTACAAGAATCCTAAAGACCAGTGTAATACCTTATATCTT
CTTTTATTTTCAGAGTACCTCACCCATGCTTTCTTCTGTGTCATGTCTGTTTGTGCAGCC
GAGGGCTGATGATGGGTTTCAATATTCCCTTCTTTGCACACCATACTTGTAGGTATGTGA
GTAGACCAGTGAAGAGCAGATCAGCACTCTATGACCCTACAAACATCATCAGTGCAGGTA
TTCAAGCATATCGTCAGAAAGAGGGGTGGTGCAAATTAGATTTTTATTTTCTAGCCTTTT
TTTACTACCTATATGGTGTGATCTATGTTGTGGTGAGCTCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEW-LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLA
FD.LK.DYKNP.DQCNTL..L...EYL.HAFFCVM..CAAE..L..G.N.P..A.H..RY.SRPV.S...LYDPT.I..A.I.AY.QKEGWCKL.FY.LA
Retrocopy
FDDLKIDYKNPKDQCNTLYLLLFSEYLTHAFFCVMSVCAAEG/LMMGFNIPFFAHHTCRYVSRPVKSRSALYDPTNIISAGIQAYRQKEGWCKLDFYFLA


Parental protein
FFYYLYGMIYVLVSS
FFYYLYG.IYV.VSS
Retrocopy
FFYYLYGVIYVVVSS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide