RetrogeneDB ID:
retro_ecab_686
Organism:
Horse ( Equus_caballus )
Location:
28:21465205-21465549 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
74.14 %
Coverage:
68.45 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
TPT1
Parental gene aliases:
No gene alias available
Parental gene description:
tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022]

Genomic region (view in browser)





>retro_ecab_686
CAAGGTGAAGATACTAAAAGCACAGTAATCACAGGTGTTGATATTGTCATCAACCATCAC
TTGTAGAAAACCCACTTCACAAAAGAAGCCTACAAGAAGTAAAACGAATATTACAGGAAA
TCAGTCAAAGGCAAACTTGAAGAACAGAGACCAGAAGGAGTAAAACCTTTCATGACAGAG
GCTGTAGAACAAATCTAGCACTTCCTTGCTAATTGCAAAACTACCGGTTCGTTATTGGTA
GAAATGTGAGTCTAGATGACATGGTTGCTTTGCTGGATTACTGTGAAGATGGTGTGACCC
CTTATATGATTTTCTGTAAGAATGGTTTAGAAATGGAAAAATGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFK-NYQFFIGENMNPDGMVALLDYREDGV
.GE.T.STVITGVDIV.NHHL..T.FTKEAYKK....Y.KS.KGKLEEQRPE.VKPFMT.A.EQI.H.LAN.K.NY.F.IG.N...D.MVALLDY.EDGV
Retrocopy
QGEDTKSTVITGVDIVINHHL*KTHFTKEAYKK*NEYYRKSVKGKLEEQRPEGVKPFMTEAVEQI*HFLANCK/NYRFVIGRNVSLDDMVALLDYCEDGV


Parental protein
TPYMIFFKDGLEMEKC
TPYMIF.K.GLEMEKC
Retrocopy
TPYMIFCKNGLEMEKC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide