RetrogeneDB ID:
retro_ecab_687
Organism:
Horse ( Equus_caballus )
Location:
28:23866205-23866561 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
69.6 %
Coverage:
64.36 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
MRPL40
Parental gene aliases:
No gene alias available
Parental gene description:
mitochondrial ribosomal protein L40 [Source:HGNC Symbol;Acc:14491]

Genomic region (view in browser)





>retro_ecab_687
TCACAAATTAGAGACACCCACCAGCGAGCTTCATTGTTGACCTTCTGGAACTCATTCCCA
TGACAGCAGACCCTTTCTGCGAAAGAAGGTAAATCCTAAAAAGACCAAGCAGGAAATGAC
CTTTTAACAAAGAGGATCCGACTACCGGGAAAACTAGCCAAGAGATAATTCCCATCGAAG
ATTTTATTACTCCTGTGAGGTTCTTGAATAAAGCAAGACAGCGGCCTCAGGTGGAGTTCC
TTTTTGAAGAGGGTAAGAGGAGAGCTCTGCTTCTGAAAAAGTGGTTGCTGTACAAGCAGC
GAAAGCATGAGATGGAGAGGGACGCCATCAGGTCCGTGCTTGAGGCTCAGCAGGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TQIRDTRRRASLLSFW-DLVPMRAE-PLRKKKKVDPK-KDQAVKDRLKKRIR-RLEKASQELIPIEDFITPVKFLDQARQRPHTELPFEEGERRALLLKK
.QIRDT..RASLL.FW..L.PM.A..P...KK.V.PK.KDQA..D.L.KRIR....K.SQE.IPIEDFITPV.FL..ARQRP..E..FEEG.RRALLLKK
Retrocopy
SQIRDTHQRASLLTFW/ELIPMTAD/PFLRKK-VNPK/KDQAGNDLLTKRIR/TTGKTSQEIIPIEDFITPVRFLNKARQRPQVEFLFEEGKRRALLLKK


Parental protein
WSLYKQREHEMERDTIRSMLEAQQE
W.LYKQR.HEMERD.IRS.LEAQQE
Retrocopy
WLLYKQRKHEMERDAIRSVLEAQQE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide