RetrogeneDB ID:
retro_ecab_689
Organism:
Horse ( Equus_caballus )
Location:
28:32063978-32064702 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.6 %
Coverage:
95.7 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_689
AAGGTAAAAGAGAGTGTAGAGAAACAATTCAACGAGTTCAGCAGCTACTGCACAAAAGAG
ATTGAAACTATAAAGAAGAATCAATTAGAAATATTAGAGATGAAAGATGCAAGGGAAGAA
ATAAAACAAAATATGGATTCCCTAAATGCTTGAGTGGACACCATAGAGGAGCATCAGCAT
AATTGAAGATAGACATGTTGAAATACTCCAGATAGAGGAGGAGAGAGAACTAAGACTAAA
AAGAAATGAAGAAAGTCTCCGAGAAATATCTGACTCAATTAGGAAATGCAACATAAGAAT
TATAGGTATTCAAGGAGAAGAGAAGAAGAATAGAGTAGAAAGCTTGTTCAAAGAAATAAT
AGCAGAGAATTTCCCAAACCTAGGGAAGGAAATCCACATGGAAGAGACTGTCAGATCCCC
TAAATATGTCAATGTAAAAAGACCTACTGCAAGGCATATAGTAGTGAAATTGGCAAAAGT
GAATGACAAAGAAAGAATACAGAAGAAAATAACCTACAAAGGAACCCCCGTCAGGCTTTC
AGTGGATTTCCCTGCGGAAAGCTTACAGGCTAGGAGAGAGTGGAATGACATATTCAAATC
TTTGAAGGACAAAAGCTTTCATCCAAGAATACTCTGTCCAGTGAAAATATCCTTCAGATA
TGATGGAGAAATAAAAACATTTTCAGACAAACATAAGCTAAGGGAGTTCATAGCTATGAG
ACCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RILTDLGRRMGELSENINKEVGNIKKNQS---EMKNTILERKISLEGLNSRVDDTEEW-MSKLDKRQEEITQAEQIKEKKIQKEGENFQETTDSMRKCNI
...........E.S....KE...IKKNQ....EMK....E.K.....LN..V.DT.E...S....R..EI.Q.E...E.......E...E..DS.RKCNI
Retrocopy
KVKESVEKQFNEFSSYCTKEIETIKKNQLEILEMKDAREEIKQNMDSLNA*V-DTIEE\ISIIEDRHVEILQIEEERELRLKRNEESLREISDSIRKCNI


Parental protein
RIIRIPEGDEKENGTESVLKGIIAENFPDLENETETRVEEAFRSPRYVNVKRTTARHIVVKLAKLNDERILRAARQKKITYKGTPLRLSVDFSVETLQAW
RII.I..G.EK.N..ES..K.IIAENFP.L..E.....EE..RSP.YVNVKR.TARHIVVKLAK.ND........QKKITYKGTP.RLSVDF..E.LQA.
Retrocopy
RIIGI-QGEEKKNRVESLFKEIIAENFPNLGKEIH--MEETVRSPKYVNVKRPTARHIVVKLAKVNDKERI----QKKITYKGTPVRLSVDFPAESLQAR


Parental protein
RDWNDILKTLKDNNLQPRILYPAKISFRYEGE-KSFLDKQKLRDFTAMRP
R.WNDI.K.LKD....PRIL.P.KISFRY.GE.K.F.DK.KLR.F.AMRP
Retrocopy
REWNDIFKSLKDKSFHPRILCPVKISFRYDGEIKTFSDKHKLREFIAMRP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide