RetrogeneDB ID:
retro_ecab_690
Organism:
Horse ( Equus_caballus )
Location:
28:41121762-41121974 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
83.33 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
TMEM167A
Parental gene aliases:
No gene alias available
Parental gene description:
transmembrane protein 167A [Source:HGNC Symbol;Acc:28330]

Genomic region (view in browser)





>retro_ecab_690
TCTGCCATTTTCAATTTTCAGAGTCTGTTGACTGTAATCTCGCTGCTATATGTACCTGTG
CTTATATCCGATCCTTGGCACCCAGCCTCCTGGACAGAAAGAAAACTGGATTGTTGGGTA
TATTTTGCAAGTGCGCCAGAATCAGTGAACAGAAGAGTCCTTATGTTGTAACACGCTGTA
CAGTGATAGCCTTCAGCATCCTCTCCATACAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SAIFNFQSLLTVILLL-ICTCAYIRSLAPSLLDRNKTGLLGIFWKCARIGERKSPYVAICCIVMAFSILFIQ
SAIFNFQSLLTVI.LL.ICTCAYIRSLAPSLLDR.KTGLLGIF.KCARI.E.KSPYV...C.V.AFSIL.IQ
Retrocopy
SAIFNFQSLLTVISLL/ICTCAYIRSLAPSLLDRKKTGLLGIFCKCARISEQKSPYVVTRCTVIAFSILSIQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide