RetrogeneDB ID:
retro_ecab_691
Organism:
Horse ( Equus_caballus )
Location:
28:42075565-42076042 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.91 %
Coverage:
58.89 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
PPA1
Parental gene aliases:
No gene alias available
Parental gene description:
pyrophosphatase (inorganic) 1 [Source:HGNC Symbol;Acc:9226]

Genomic region (view in browser)





>retro_ecab_691
CTCTCTCCATTTCGTGATATTCCAATTTATGCAGATGAGGATGTGTTCCACACGGTGGTT
GAAGCGCCACTCTGGTCTAAGACAAAGATGGAGATTGCTACAAAGGACCCTTTCAAACCA
ATTAAACAAGAAATGATGAAAGGAAAACTTCGTTATGTGGCAAATTTGTTCCCTTGTAAA
GGATATATCTGAAACTATGGTGCCATCCCTCAGACTTGGGAAGACCCAGGACATAATGAC
AAACACACTGGCTGTTGTGGTGAACATGACCCAATTGATGTGTGTGAAATTGGAAGCAAG
GTGTGCTCAAGAGGTGAAATAATCGTGGTGAAATTTCTGGGCATCTTGGCTATGATTGAT
GAATGGGAAACCACCTGGAAAGTCATTGCCATTAATGTGGATGATCCTGATGCAGCCAAT
TATAATGATGTTAATGATGTCAAGCGGCTGAAACCTGGTTACCTGGAAGCTACTGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ISPFHDIPIYADKDVFHMVVEVPRWSNAKMEIATKDPLNPIKQDVKKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDQHTGCCGDNDPIDVCEIGSK
.SPF.DIPIYAD.DVFH.VVE.P.WS..KMEIATKDP..PIKQ...KGKLRYVANLFP.KGYI.NYGAIPQTWEDPGHND.HTGCCG..DPIDVCEIGSK
Retrocopy
LSPFRDIPIYADEDVFHTVVEAPLWSKTKMEIATKDPFKPIKQEMMKGKLRYVANLFPCKGYI*NYGAIPQTWEDPGHNDKHTGCCGEHDPIDVCEIGSK


Parental protein
VCARGEIIAVKVLGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKPGYLEATV
VC.RGEII.VK.LGILAMIDE.ET.WKVIAINVDDPDAANYND.NDVKRLKPGYLEATV
Retrocopy
VCSRGEIIVVKFLGILAMIDEWETTWKVIAINVDDPDAANYNDVNDVKRLKPGYLEATV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide