RetrogeneDB ID:
retro_ecab_692
Organism:
Horse ( Equus_caballus )
Location:
28:248419-248967 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.65 %
Coverage:
51.84 %
Frameshifts:
1
Stop codons:
5


Parental gene:
Parental gene symbol:
HOMER2
Parental gene aliases:
No gene alias available
Parental gene description:
homer homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:17513]

Genomic region (view in browser)





>retro_ecab_692
TCTGTGACATAGAGTGCTGCCAATGTGAAGAAATAGGAGAATAAGCTGCAGACCCTACAG
GAGAGCAATGTCTGGCTGACCATGGCACTGCAGGAGTCAGTGGCCAGCATGGAGCAGTGA
AAGAGGAAGTTCTCTATCTGCCCTGAAGAGAATGACTGGCTGTGGAACAATCCTGAGGAG
TTGGAAGAACAATGCAAAGAGATAACAAAGAGAAGGAGAAGCATACCCAGTTGAAGAAAA
GAATTGAGGAGCTGGAGTCAGAACTCTGAGAAAAGAAGATAGAGTTAAAAGACCTCCAAA
AACAAAGTAAACTCAGACCTCAGCTCATGTCAGAGTATGAATACATTTCTGAGAAGCTAG
AGGCAGCAAAGAGAGATAATCAAAACCAGAGAGACAAAGTGCTTTCTCTAAAGACAGACA
TTGAGGAAAGTAACTACTGACCATGCCACTTGAAGGCAGAATTGAAGAACTTCTTGAAGG
TGCTGGATGGGAAGATAAATGACCTCCACAACTTCTGTGGAGGCCTCTGCAAGCTGGGCA
AGGAAAAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ALTQSAANVKKWEVELQTLRESNARLTAALQESAASAEQWKRQFSVCRDENDRLRHKIDELEEQCSEI-NREKEKNTQLKRRIEELESELREKETELKDL
..T.SAANVKK.E..LQTL.ESN..LT.ALQES.AS.EQ.KR.FS.C..END.L.....ELEEQC.EI.N.EKEK.TQLK.RIEELESEL.EK..ELKDL
Retrocopy
SVT*SAANVKK*ENKLQTLQESNVWLTMALQESVASMEQ*KRKFSICPEENDWLWNNPEELEEQCKEI/NKEKEKHTQLKKRIEELESEL*EKKIELKDL


Parental protein
RKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEESKYRQRHLKVELKNFLEVLDGKIDDLHDFRRGLSKLGTDN
.KQS...PQLMSE.EY.SEKLEAA.RDNQN..DKV.SLKTDIEES.Y...HLK.ELKNFL.VLDGKI.DLH.F..GL.KLG..N
Retrocopy
QKQSKLRPQLMSEYEYISEKLEAAKRDNQNQRDKVLSLKTDIEESNY*PCHLKAELKNFLKVLDGKINDLHNFCGGLCKLGKEN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide