RetrogeneDB ID:
retro_ecab_693
Organism:
Horse ( Equus_caballus )
Location:
28:7484166-7484393 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.43 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
SNRPG
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:11163]

Genomic region (view in browser)





>retro_ecab_693
ATGAGCAAAGCGCACCCTCTTGACTTGAAAAACATTAAGGACAAGAAATTATCATTGAAA
TTAAACAGTAGCAGACATGTCTAAAGAATATTGAGGGCATTTGATCCCTTAACAAATCTT
GCAATAGATGAATGTATGGAGATCATACCTGGGGGCAACAGAACAATATTGGAATGGTTG
TAACACAAGGAAATAGTATCACCATGCTGGAAGCCTTGGAAGGAGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMA-TSGQQNNIGMVVIRGNSIIMLEALERV
MSKAHP..LK...DKKLSLKLN..RHV..ILR.FDP..NL.IDEC.E...T.GQQNNIGMVV..GNSI.MLEALE.V
Retrocopy
MSKAHPLDLKNIKDKKLSLKLNSSRHV*RILRAFDPLTNLAIDECMEII/TWGQQNNIGMVVTQGNSITMLEALEGV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide