RetrogeneDB ID:
retro_ecab_694
Organism:
Horse ( Equus_caballus )
Location:
28:20728439-20729423 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
70.41 %
Coverage:
77.44 %
Frameshifts:
5
Stop codons:
2
Parental gene:
Parental gene symbol:
GOT2
Parental gene aliases:
No gene alias available
Parental gene description:
glutamic-oxaloacetic transaminase 2, mitochondrial [Source:HGNC Symbol;Acc:4433]
Genomic region (view in browser)
>retro_ecab_694
ATGGCCTTGCAGTGCTCTGGCTGCATCCTGTCTGGGGTCCTGCCGCCCTCCACCCAGGCC
TCGCTGTGGCAGCCTCTGCCAGATCCATCTCAGTGGGAGATGGGACCCCCAGATCCCATC
CTAGGAGTCACAGGAATCTGTAAGAGAGACACCAACAGCAAAAAGATGAATCTAGGAGGT
GGTGCCTACTGCGATGATAGTGGAAAGCCTTACATGATCCCTAGCTTCCGGAAGGCAGAG
GCCCAGATTGGTGCAAAAAAAATGGACAAAGAATACCTGTCCATTGTGAGACTGGCTGAA
TTTTGTAAGGTTTCTGCAAAATTAGCCCTGGGTGAGAACAGCAGAGTGCTGAAAAGTGAC
CAGTATGTCACTGTGCAGACCATTTCTGGAACTGAGGCCCTAAGGACCGCAGCCAGTTTT
CTGCAAAGATTTTTAAAGTTCAGCCGAGATGTCTTTCTGCCCAAACATCCTGGGAAAATC
ATACACCCATCCTCAGGGACGCTGGATGCAGCTACATGGTTATTGATACTGTGACCCCAA
GACTTGTAGCTTTGACTTCACAGTGCTATGAAGGACACTTTAAAAATGCCAGAGCAAAGT
GTTTTTCTCCTGCATGACCATGTCCACAATCCCAGGCGAGTGGACCCTCATTCTAAGCAG
TGGAAGGAAATAGCAACGGTAGTGAGGAAACAGAATCTCTTTTCGTTCTTTGAAGTGGCC
TACCAAGGCTTTGCCGGTGGTGATGGTAACAAGGATGCCTGGGCAGTGCGCCACTTCATT
GAAGAGGGCATTAATATTTGTCTCTTCCAATCCTTTGCCAAGAACGTGGACTTATATGGT
GACTGTGTGGGAGCCTTCACTGTGGTCTGCGAAGATGCTGATGAAGCCAAAAGGGGGGAG
TGACAGTTGAAGATCTTGATCCGTTCCACGTATTCCAACCCTCTTCTCAAAGGGGCCCGG
ATTGCCTCAACCATTCTGACAGCT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.12 |
| SRP021940_cerebellum | 0.1 |
| SRP021940_embryo | 0.05 |
| SRP021940_placental_villous | 0.49 |
| SRP021940_synovial_membrane | 0.29 |
| SRP021940_testis | 0.12 |
Parental protein coverage
Changes in the retrocopy sequence
