RetrogeneDB ID:
retro_ecab_695
Organism:
Horse ( Equus_caballus )
Location:
28:43802872-43803224 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.02 %
Coverage:
66.67 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_695
TTAGAAACCATAAAAAGTAGAGCTGAAGTTATGGAGGACAGAATTAGTGAATTAGAGGAC
AGAAATATAGAAATGCTTCAGATAGCTGAGGAGAGAGAACTAAGATTTAAAAGATGAAGA
AATTCTTTGAGAAATCTGACTCAATTAATGAAAGCAATATAAGGATTATAGGTATTCCAG
AGGGGGAAGAGAGAGATAAAGGAGCATAGAGCTTGTTGAAAGAAATAACAGCTGAGAACT
TCCCAAACCTGGCGAAGAAACTGGACTTACAAATACATGAAGACAATACAACTCCTAATT
ACATCATGTAAACAGACTTTCTCCAAGTCATATAATACTAAAACTGGCAAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VESINNRMDQAEETC-ELEDRTFEIIQSEENKEKRMK-KIKDSLLEKYLTIRKSNIRIIGIPEGEEKQKDTESLFKEIIAENFPNLGKKLDLQVHEANRT
.E.I..R....E....ELEDR..E..Q..E..E.R.K.K.K....EK...I..SNIRIIGIPEGEE..K...SL.KEI.AENFPNL.KKLDLQ.HE.N.T
Retrocopy
LETIKSRAEVMEDRISELEDRNIEMLQIAEERELRFK/KMK-KFFEKSDSINESNIRIIGIPEGEERDKGA*SLLKEITAENFPNLAKKLDLQIHEDNTT


Parental protein
PNYI-KAKRPSPRHIVLKLVK
PNYI....R.SP.HI.LKL.K
Retrocopy
PNYI/HVNRLSPSHIILKLAK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide