RetrogeneDB ID:
retro_ecab_698
Organism:
Horse ( Equus_caballus )
Location:
29:33471745-33472150 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
91.11 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_698
ATGGCTGCCCTCAGACCCCTTGCGAAGCCCAAGATCATCAAAAAGAGGACCAAGAAGTTC
ATTTGGCACCAGTCAGACCGATATGTCAAAATTAAGCGTAACTGGCGGAAACCCAGAGGC
ATTGACAATAGGGTGCGCAGAAGATTCAAGGGCCAGATCTTGATGCCCAACATTGGTCAT
GGGAGCAATAAGAAAATGAAGCACATGCTGCCCAGTGTCTTCCAGAAGTTCCTGGTCCAC
AATGTCAAGGGGCTTGAAGTGCTGGTGATGTGCAACAAATCGTACTGTGCTGAGATTGCT
CACAACGTCTCCTCCAAGAACCACAAAGCCATCGTGGAGAAAGCAGCCCAGCTGGCCATC
AGAATCACCAATCCCAATGCCAGGCTGCACAGTGAAGAAAACGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.12
SRP021940_cerebellum 0.05
SRP021940_embryo 0.26
SRP021940_placental_villous 0.18
SRP021940_synovial_membrane 0.13
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIA
MAALRPL.KPKI.KKRTKKFI.HQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIG.GSNKK.KHMLPS.F.KFLVHNVK.LEVL.MCNKSYCAEIA
Retrocopy
MAALRPLAKPKIIKKRTKKFIWHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGHGSNKKMKHMLPSVFQKFLVHNVKGLEVLVMCNKSYCAEIA


Parental protein
HNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE
HNVSSKN.KAIVE.AAQLAIRITNPNARL.SEENE
Retrocopy
HNVSSKNHKAIVEKAAQLAIRITNPNARLHSEENE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide