RetrogeneDB ID:
retro_ecab_699
Organism:
Horse ( Equus_caballus )
Location:
29:5959522-5959936 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.57 %
Coverage:
83.64 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_699
TTGGTCCCCAAGACTGGCCTCCTGGTTCTGTCTCCAAAAAAAGGTGTTTGATGACATCAC
AAAGGCAACCAGTGATTGGAAGGGTCTGAGGATCACGGTGAAACTGACGATCCAGAATCA
ACAGGTTCAGATTGAGGCGGTATTTTCTGCCTCTGCCCTGATCATCACAGCCCTCCAGGA
ACCACCAAGAGACCAGAAGAAGCAGAAAAACGTGAAACATAGTGGAAATATCACCTTCGA
TGAGATTGTGAACATTGCCTGACAGATGTGGTGCCAGTCATTGGCCAAGGACTCTCTGGA
ACCATTGAAGAGATCCTGGGGACTGCCCAGTCTGTGGGTTGAAACGTTGATGGCCACCAC
CCTCATGACATCATAGATGACATCAAGAGTGGTGCGGTGGGATGCCCAGCTAGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.59

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LAPKIGPLGLSPKK-VGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARE-L
L.PK.G.L.LSPKK.V.DDI.KAT.DWKGLRITVKLTIQN.Q.QIE.V.SASALII.AL.EPPRD.KKQKN.KHSGNITFDEIVNIA.QM...SLA...L
Retrocopy
LVPKTGLLVLSPKK\VFDDITKATSDWKGLRITVKLTIQNQQVQIEAVFSASALIITALQEPPRDQKKQKNVKHSGNITFDEIVNIA*QMWCQSLAKD/L


Parental protein
SGTIKEILGTAQSVGCNVDGRHPHDVIDDINNGAVECPAS
SGTI.EILGTAQSVG.NVDG.HPHD.IDDI..GAV.CPAS
Retrocopy
SGTIEEILGTAQSVG*NVDGHHPHDIIDDIKSGAVGCPAS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide