RetrogeneDB ID:
retro_ecab_7
Organism:
Horse ( Equus_caballus )
Location:
X:17345722-17347597 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.2 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
DDX43
Parental gene aliases:
No gene alias available
Parental gene description:
DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Source:HGNC Symbol;Acc:18677]

Genomic region (view in browser)





>retro_ecab_7
ATGGCCTGGGCCCCCGAGTGGAGGAGGGCAGAGCCTCGAGATGGCAGGGCCAGCCGGGAT
GGCAGGGGCGGCACGGGCGGCAGCGGCCTCTCCAGGTACTGGGAGCCGAGGGCCTTTGGC
TCCCGGGAACCACCCCTGTGCTTCAGAATAAAGAACAGTATGGTTGGCGTGGTGATTGGT
CGCGGAGGGTCAAAGATAAAAGACATCCAGAGTATGACGAGCACCAAAATACAGATCGTA
AAAGGTGACTCTGAAGCCGAGGTCAAGATTTTTGGCAGCGAAGCCATGAAGGGAAAAGCG
AAAGCACTTATACAAACCCTCGTGCGAAAACAAGAAGGAAGGTACAGTTCGGTAGCCAGT
GTAGATAATGCCGCCTCCCAGTCCTCTGCTGGGAGAGACTTACGCACACGCCCCGTTGTT
AGACAAGTGCGGCCGCTGATAGACTGGGATCACGTTAAGGCAGAAGGGGCGGCATGGGCA
AAAAGAAAATGGGCGGATTTACCACCAATCAAGAAAAACTTCTACGTAGAATCCACAGCA
ACAAGCTCGCTGTCTCAAGTGCAAGTAGACGCTTGGAGACAGGAAAATTTCAACATAACG
TGTGAGGACCTGAAAGACGGCGAAAAACGTCCCATCCCCAACCCGACCTGTAAATTTGAG
GATGCCTTTGAGCACTATCCCGAGGTCCTGAAAAGCATTAAGAAAGCAGGTTTCCAAAGG
CCAACGCCCATTCAGTCACAGGCATGGCCGATTGTGCTACAAGGAATGGATCTGATAGGA
GTTGCCCAAACCGGGACAGGCAAGACCTTGTCTTATTTGATACCCGGCTTTATTCACCTT
GATTCGCAGCCCATATCTAGAGAAGAAAGAAATGGGCCTGGCATGCTCGTCCTCACCCCC
ACGCGAGAGCTAGCTCTTCAGGTCGAGGCAGAATGTTCTAAGTATTCCTACAAAGGTCTT
AAAAGCGTTTGTGTATACGGCGGTGGAAACAGAAAAGAGCAAATTCAGCACATTACCAAA
GGCGTCGACATCATTATTGCAACTCCTGGACGACTGAATGATCTGCAGATGAACAAGTGT
GTCAACCTACGAAGCATCACTTACTTGGTGTTAGACGAAGCGGATAAAATGTTGGATCTG
GGCTTTGAAGGCCAGATCACGAAGATTCTACTAGATGTGCGCCCAGACCGGCAGACTGTT
ATGACAAGTGCAACGTGGCCACACACCATTCGCCAACTTGCAAGATCTTATTTGAAAGAG
CCTATGATTGTTTATGTCGGTACTCTAGATCTCGTTGCTGTCCATACAGTGAAGCAAGAC
ATCATTGTCACCACAGAGGAAGAAAAACGAACTCTTATCCAAGAATTCCTACGGAACCTG
GCACCCGAAGACAAAGCTATCATATTTGTCAGCAGAAAGCTGGTTGCAGATGACTTATCA
AGCGATCTGAGCATCCAGGGCGTCCCGGTACAATCCCTGCACGGCAACAGAGAGCAGTTT
GACCGCGAGCAGGCGTTAGACGACTTCCGAAGTGGAAGAGTGAAGATATTGATTGCTACC
GATTTAGCAGCCCGAGGCCTCGATGTCAGGGATGTCACACACGTATACAACTACGATTCC
CCAAAGAATCTTGAAGAATACGTGCATAGAGTAGGGCGTACTGGAAGAGCAGGCAAGACT
GGAGTCTCTGTCACCCTTATGACTCAAGCTGACTGGAAGATTGCCACTGAATTGATTAAA
ATTCTGGAAAGAGCTAATCAAAGTGTCCCAGAAGATCTTCTGAAAATGGCAGAGCAATGC
AAGTTGCAGAAAGGAAAAAAGGACTCAGGCAATGGAGCCAGAAACCCTCAAGGAAAAGCC
AAGCAGTTTTACTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 8.49

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GHGGSKIRDIQSTTNTKIQIIKGYPEAEVKIFGSKMMQTKAKAVIDNLVKKQE-NYNSEPRVDIVALHPSAGRGVRANVSVVTEDQPLIDWDQIREEGLK
G.GGSKI.DIQS.T.TKIQI.KG..EAEVKIFGS..M..KAKA.I..LV.KQE..Y.S...VD..A...SAGR..R....VV....PLIDWD....EG..
Retrocopy
GRGGSKIKDIQSMTSTKIQIVKGDSEAEVKIFGSEAMKGKAKALIQTLVRKQEGRYSSVASVDNAASQSSAGRDLRTR-PVVRQVRPLIDWDHVKAEGAA


Parental protein
WEKKKWADLPLIKKNFYMESETTSSMSQMQVDNWRKENYNIMCDDLKGGEKRPIPNPTCQFEDAFQCYPEVMENIQKAGFQKPTPIQSQAWPIVLQGIDL
W.K.KWADLP.IKKNFY.ES..TSS.SQ.QVD.WR.EN.NI.C.DLK.GEKRPIPNPTC.FEDAF..YPEV...I.KAGFQ.PTPIQSQAWPIVLQG.DL
Retrocopy
WAKRKWADLPPIKKNFYVESTATSSLSQVQVDAWRQENFNITCEDLKDGEKRPIPNPTCKFEDAFEHYPEVLKSIKKAGFQRPTPIQSQAWPIVLQGMDL


Parental protein
IGVAQTGTGKTLSYLMPGFIHLDSQPIAREKRNGPGMLVLTPTRELALQVEAECSKYSYKGLKSVCIYGGGDRNGQIQDLTKGVDIIIATPGRLNDLQMN
IGVAQTGTGKTLSYL.PGFIHLDSQPI.RE.RNGPGMLVLTPTRELALQVEAECSKYSYKGLKSVC.YGGG.R..QIQ..TKGVDIIIATPGRLNDLQMN
Retrocopy
IGVAQTGTGKTLSYLIPGFIHLDSQPISREERNGPGMLVLTPTRELALQVEAECSKYSYKGLKSVCVYGGGNRKEQIQHITKGVDIIIATPGRLNDLQMN


Parental protein
NFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATWPYSVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEEEKRSHIQTFLE
..VNL.S.TYLVLDEADKMLD.GFE.QI.KILLDVRPDRQTVMTSATWP...R.LA.SYLKEPMIVYVGTLDLVAV.TVKQ.IIVTTEEEKR..IQ.FL.
Retrocopy
KCVNLRSITYLVLDEADKMLDLGFEGQITKILLDVRPDRQTVMTSATWPHTIRQLARSYLKEPMIVYVGTLDLVAVHTVKQDIIVTTEEEKRTLIQEFLR


Parental protein
SMSPKDKVIVFVSRKAVADHLSSDLILQHISVESLHGNREQSDRERALENFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAG
...P.DK.I.FVSRK.VAD.LSSDL..Q...V.SLHGNREQ.DRE.AL..F..G.V.ILIATDLA.RGLDV.DVTHVYNYD.P.N.EEYVHRVGRTGRAG
Retrocopy
NLAPEDKAIIFVSRKLVADDLSSDLSIQGVPVQSLHGNREQFDREQALDDFRSGRVKILIATDLAARGLDVRDVTHVYNYDSPKNLEEYVHRVGRTGRAG


Parental protein
RTGVSITLLTRNDWRVANELINILERANQSIPEDLVSMAERYKANKLKKEMEKKLGRPQGKPKKFY
.TGVS.TL.T..DW..A.ELI.ILERANQS.PEDL..MAE..K..K.KK........PQGK.K.FY
Retrocopy
KTGVSVTLMTQADWKIATELIKILERANQSVPEDLLKMAEQCKLQKGKKDSGNGARNPQGKAKQFY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide