RetrogeneDB ID:
retro_ecab_7
Organism:
Horse ( Equus_caballus )
Location:
X:17345722-17347597 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
74.2 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
DDX43
Parental gene aliases:
No gene alias available
Parental gene description:
DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Source:HGNC Symbol;Acc:18677]
Genomic region (view in browser)
>retro_ecab_7
ATGGCCTGGGCCCCCGAGTGGAGGAGGGCAGAGCCTCGAGATGGCAGGGCCAGCCGGGAT
GGCAGGGGCGGCACGGGCGGCAGCGGCCTCTCCAGGTACTGGGAGCCGAGGGCCTTTGGC
TCCCGGGAACCACCCCTGTGCTTCAGAATAAAGAACAGTATGGTTGGCGTGGTGATTGGT
CGCGGAGGGTCAAAGATAAAAGACATCCAGAGTATGACGAGCACCAAAATACAGATCGTA
AAAGGTGACTCTGAAGCCGAGGTCAAGATTTTTGGCAGCGAAGCCATGAAGGGAAAAGCG
AAAGCACTTATACAAACCCTCGTGCGAAAACAAGAAGGAAGGTACAGTTCGGTAGCCAGT
GTAGATAATGCCGCCTCCCAGTCCTCTGCTGGGAGAGACTTACGCACACGCCCCGTTGTT
AGACAAGTGCGGCCGCTGATAGACTGGGATCACGTTAAGGCAGAAGGGGCGGCATGGGCA
AAAAGAAAATGGGCGGATTTACCACCAATCAAGAAAAACTTCTACGTAGAATCCACAGCA
ACAAGCTCGCTGTCTCAAGTGCAAGTAGACGCTTGGAGACAGGAAAATTTCAACATAACG
TGTGAGGACCTGAAAGACGGCGAAAAACGTCCCATCCCCAACCCGACCTGTAAATTTGAG
GATGCCTTTGAGCACTATCCCGAGGTCCTGAAAAGCATTAAGAAAGCAGGTTTCCAAAGG
CCAACGCCCATTCAGTCACAGGCATGGCCGATTGTGCTACAAGGAATGGATCTGATAGGA
GTTGCCCAAACCGGGACAGGCAAGACCTTGTCTTATTTGATACCCGGCTTTATTCACCTT
GATTCGCAGCCCATATCTAGAGAAGAAAGAAATGGGCCTGGCATGCTCGTCCTCACCCCC
ACGCGAGAGCTAGCTCTTCAGGTCGAGGCAGAATGTTCTAAGTATTCCTACAAAGGTCTT
AAAAGCGTTTGTGTATACGGCGGTGGAAACAGAAAAGAGCAAATTCAGCACATTACCAAA
GGCGTCGACATCATTATTGCAACTCCTGGACGACTGAATGATCTGCAGATGAACAAGTGT
GTCAACCTACGAAGCATCACTTACTTGGTGTTAGACGAAGCGGATAAAATGTTGGATCTG
GGCTTTGAAGGCCAGATCACGAAGATTCTACTAGATGTGCGCCCAGACCGGCAGACTGTT
ATGACAAGTGCAACGTGGCCACACACCATTCGCCAACTTGCAAGATCTTATTTGAAAGAG
CCTATGATTGTTTATGTCGGTACTCTAGATCTCGTTGCTGTCCATACAGTGAAGCAAGAC
ATCATTGTCACCACAGAGGAAGAAAAACGAACTCTTATCCAAGAATTCCTACGGAACCTG
GCACCCGAAGACAAAGCTATCATATTTGTCAGCAGAAAGCTGGTTGCAGATGACTTATCA
AGCGATCTGAGCATCCAGGGCGTCCCGGTACAATCCCTGCACGGCAACAGAGAGCAGTTT
GACCGCGAGCAGGCGTTAGACGACTTCCGAAGTGGAAGAGTGAAGATATTGATTGCTACC
GATTTAGCAGCCCGAGGCCTCGATGTCAGGGATGTCACACACGTATACAACTACGATTCC
CCAAAGAATCTTGAAGAATACGTGCATAGAGTAGGGCGTACTGGAAGAGCAGGCAAGACT
GGAGTCTCTGTCACCCTTATGACTCAAGCTGACTGGAAGATTGCCACTGAATTGATTAAA
ATTCTGGAAAGAGCTAATCAAAGTGTCCCAGAAGATCTTCTGAAAATGGCAGAGCAATGC
AAGTTGCAGAAAGGAAAAAAGGACTCAGGCAATGGAGCCAGAAACCCTCAAGGAAAAGCC
AAGCAGTTTTACTGA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.04 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 8.49 |
Parental protein coverage
Changes in the retrocopy sequence
