RetrogeneDB ID:
retro_ecab_701
Organism:
Horse ( Equus_caballus )
Location:
29:13710494-13710738 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
50.59 %
Coverage:
66.94 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
NDUFS6
Parental gene aliases:
No gene alias available
Parental gene description:
NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) [Source:HGNC Symbol;Acc:7713]

Genomic region (view in browser)





>retro_ecab_701
CTGCTGGGCCAGAGCGGCAGGTGGCGTGGAGCCCGCTATGGGGCACCAGACGTTTGGGGC
TGTGAACTTCGCCCACTGGGGAGAAGATCGTGCACACTGACCGGGTTTATGTTAAAGCCT
GCAGGAAAATTCCATCTTTAGGTCATCAGAGAGAGGTGAGTGAGACCTTGCTGTTGAATT
TGACAGCAGAGCAGCCGGTAATGAAGTTGAGAGTCGAGTGATGGCGTGTGACGGCTGTGG
GGGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.71

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LLGRGGG-AALSLPGGARCFGVRTSPTGEKVTHTGQAYGAEDYRRIRFVGRQKEVNENFAIDLIAEQPV-SEVESRVISCDGGGG
LLG..G...A.S...G.R..G..TSPTGEK..HT...Y.....R.I...G.Q.EV.E.....L.AEQPV..EVESRV..CDG.GG
Retrocopy
LLGQSGR/VAWSPLWGTRRLGL*TSPTGEKIVHTDRVY-VKACRKIPSLGHQREVSETLLLNLTAEQPV/NEVESRVMACDGCGG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide