RetrogeneDB ID:
retro_ecab_702
Organism:
Horse ( Equus_caballus )
Location:
29:15356918-15357402 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
55.03 %
Coverage:
93.22 %
Frameshifts:
3
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_702
ATAGAGAGCTTCTACAGAAGAGTAGATCAAATGGAAGAGAGAATAGGTGATCTAGAGGAC
AAGAACTTCAAAATAACTGAAGAGAACAGAGAAAAACAGAATGAAAAAGAGTAAAGAAAG
CCTACATGATCCATGAGATTCCATTAAATGTACAAATATTTAAATAATTGGGATTCAAGA
AGGAGAAGAGAGACAGAAGGAGACAGAAAGTTTATTTAAAGAAATAACAGCTGAGAACTT
CCCAAATTTGGAGAGAGACTTGGAATCTAGGTTCACAAAGCTAATAGATCACTCTATTAT
CTTAATGCAAAATGACCTTCTCCAAGATACATTATAATGAAACTGTCAAAAATCAAAGAT
AAAGAGAGTGACCAGAGGAAAAAAAATTGTAACCTACAAAGGAACCCCCATTAAGCTATC
AGCATATTTCTCAGCAGAAACCTGACAGGCTAGAAGAGGCTGGAATGACACATTCAAAGT
ATTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VESINNRMDQAEETC-ELEDRTFEIIQSEENKEK-RMKKIKDSLLEKYLTIRKSNIRIIGIPEGEEKQKDTESLFKEIIAENFPNL-GKKLDLQVHEANR
.ES...R.DQ.EE....LED..F.I...EEN.EK.RMKK.K.SL......I...NI.IIGI.EGEE.QK.TESLFKEI.AENFPNL.G..L...VH.ANR
Retrocopy
IESFYRRVDQMEERIGDLEDKNFKI--TEENREK\RMKKSKESLHDP*DSIKCTNI*IIGIQEGEERQKETESLFKEITAENFPNL/GERLGI*VHKANR


Parental protein
TPNYIKAKRPSPRHIVLKLVKVNDKEKILRAERQKKINYKR-TPIRLSADFSAETLHTKKEWNDTFETL
...Y..AK.PSPR.I..KL.K..DKE......R....N..R.TPI.LSA.FSAET......WNDTF..L
Retrocopy
SLYYLNAK*PSPRYIIMKLSKIKDKES---DQRXXXCNLQR\TPIKLSAYFSAET*QARRGWNDTFKVL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide