RetrogeneDB ID:
retro_ecab_707
Organism:
Horse ( Equus_caballus )
Location:
3:7730203-7730914 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
68.35 %
Coverage:
87.92 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
CAPNS1
Parental gene aliases:
No gene alias available
Parental gene description:
calpain, small subunit 1 [Source:HGNC Symbol;Acc:1481]
Genomic region (view in browser)
>retro_ecab_707
AATGGAGGCCTTGGAGAAGCTCTTGGAGGCCTTCTTGGAGGAGGCGGTCAGAAAAGAGGA
GGAGGAGGAAATATTGGAGCGATAGTTGGGGGAATTATGAATTTTATCAGTGAGGCTGCA
GCAGCCCAGTATACCCCCGAGCCGCCGCCATCCACTCAGCAGCATTTCACCACCGTGGAG
GCCAACGAAAGTGAGGAGGTGCGGCAGTTTCGGCAACAGTTTGCGCGACTGGCTGGACCC
GACATGGAGGTGGGTGCCACTGACCTGATGAACATTCTCAACAAAGTCCTCGCTAAGCAC
AAGGATCTGAAGTCGGACGGCTTCAGTCTTGACACCTGCCGGAGCATTGTATCCGTTATG
GACAGTGACACGAATGGGAAGCTGGGCTTTGAAGAATTTAAGTACTTCTGGAACAACATC
AAGAAGTGGCAGTGTGTTTTCAGGCAACATGACACGGACCGTTCCGGGTCTCTGAGGAGT
TCCCAGCTGAAGGGGGCTCTGCAGGCGGCAGGTTTCCAGCTAAACGAGCAGCTCTACCGA
ATGATCGTCCGCCGCTACGCCGATGAGAATGGAAGCATGGATTTTAACAACTTCATCAGC
TGCCTGGTCCGCCTGGATGCCATGTTCCGTGCCTTCAAATCTCTGGATAGAAATGCAAGT
GGCCTGATTGAGGTGTCTATCCAGGAGTGGCTGCAGCTGACCATGTACTCC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.05 |
| SRP021940_embryo | 0.98 |
| SRP021940_placental_villous | 8.32 |
| SRP021940_synovial_membrane | 0.16 |
| SRP021940_testis | 0.06 |
Parental protein coverage
Changes in the retrocopy sequence
