RetrogeneDB ID:
retro_ecab_708
Organism:
Horse ( Equus_caballus )
Location:
3:10766720-10767040 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.07 %
Coverage:
63.64 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_708
AGACTGACCATTCAGAACAGACAGGCCCAAACTGAGGTGGTACCTTCTGCTTCTGCCCTG
ATCATCAAAGCCCTCAGGAAACCACTTCTGTTCAGAGACAGAGAGAATCAGAAAAACATT
GAGCACAGTGAAAATATAATGTTGATGAGATTGTCAACCTTGCCCGAAAGTTCTGGCAGT
GATCTTTAGCCAGAGAACTCTCTGGAACCATTAAAGACATCCTGGGGACTGCCCAGTCTG
TGGGCTGCAATGTTGATGGCCTGTACCATCATGACATGGTAGATGACATCAACAGTGGTG
CGGTTGAATGCCCAGCTACT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KLTIQNRQAQIEVVPSASALIIKALKEPP--RDRKKQKNIKHSGNITF-DEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDVIDDINN
.LTIQNRQAQ.EVVPSASALIIKAL..P...RDR..QKNI.HS.NI...DEIVN.AR.....SLARELSGTIK.ILGTAQSVGCNVDG...HD..DDIN.
Retrocopy
RLTIQNRQAQTEVVPSASALIIKALRKPLLFRDRENQKNIEHSENIML/DEIVNLARKFWQ*SLARELSGTIKDILGTAQSVGCNVDGLYHHDMVDDINS


Parental protein
GAVECPAS
GAVECPA.
Retrocopy
GAVECPAT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide