RetrogeneDB ID:
retro_ecab_71
Organism:
Horse ( Equus_caballus )
Location:
16:48275876-48276764 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.31 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPSA
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_71
ATGTCCGGAGCCCTTGACGTCCTGCAAATGAAGGAGGAGGATGTCCTCAAATTCCTTGCA
GCAGGAACCCACTTAGGTGGCACCAACCTTGACTTCCAGATGGAACAGTACATCTACAAA
AGGAAAAGTGATGGCATCTACATCATAAATTTGAAGAGAACCTGGGAGAAGCTGCTGCTG
GCAGCTCGTGCCATTGTTGCCATTGAAAACCCAGCTGACGTCAGTGTCATATCCTCCAGG
AATACTGGCCAGCAAGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCACTCCTATTGCT
GGCCACTTCACTCCTGAAACCTTCACTAACCAGATCCAGGCAGCCTTCCGGGAACCGAGA
CTTCTGGTGGTAACTGATCCCAGGGCTGACCACCAGCCTCTCACAGAGGCGTCTTATGTT
AACCTGCCTACCATTGCTCTGTGTAACATAGACTCTCCCCTGCGCTATGTGGACATAGCC
ACCCCATGCAACAATAAGGGAGCTCACTCTGTGGGTCTGATGTGGTGGATGCTTGCCCGG
GAAGTTCTGCGCATGCGGGGTACCATCTCCCGTGAACACCCATGGGAGGTCATGCCTGAT
CTCTACTTCTACAGAGATCCTGAAGAGATTGAAAAGGAAGAGCAGGCTGCTGCTGAAAAG
GCTGTGACCAAGGAGGAATTTCAGGGTGAATGGACTGCTCCTGCTCCTGAGTTCACTGCT
ACTCAACCTGAGGTTGCAGACTGGTCTGAAGGCGTGCAGGTGCCCTCTGTGCCTATTCAG
CAGTTCCCTACTGAAGACTGGAGTGCTCAGCCTGCCACTGAAGACTGGTCTGCAGCTCCC
ACTGCTCAGGCCACTGAGTGGGTAGGAACAACCACTGAGTGGTCTTAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 33.16
SRP021940_cerebellum 21.66
SRP021940_embryo 44.08
SRP021940_placental_villous 29.2
SRP021940_synovial_membrane 43.26
SRP021940_testis 26.64

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIA
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQ.AVLKFAAATGATPIA
Retrocopy
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQQAVLKFAAATGATPIA


Parental protein
GRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPD
G.FTP.TFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCN.DSPLRYVDIA.PCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPD
Retrocopy
GHFTPETFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNIDSPLRYVDIATPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPD


Parental protein
LYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS
LYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS
Retrocopy
LYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide