RetrogeneDB ID:
retro_ecab_710
Organism:
Horse ( Equus_caballus )
Location:
3:13822579-13823045 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.44 %
Coverage:
61.81 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
FAM192A
Parental gene aliases:
No gene alias available
Parental gene description:
family with sequence similarity 192, member A [Source:HGNC Symbol;Acc:29856]

Genomic region (view in browser)





>retro_ecab_710
AGGAATCAGAAACTAACAGAAAAGCAACAAAGAGAAGAACTGAAAGAAATGAAGGAATAC
AAAAGCAATCTCAATGAGGTTGGGATTTCTCCAGAAAACAAGAAAGAAGTGGAGAAGTAA
CTGGCTGTGAAACCTAGAGGAACCAAGAACAAGTTCTCCCAGGCACAGCTGTTGCCAGGA
GCTCTGAAGCATGAGAGCTCAGAGAGTGGCCACAGTGTGAAAAGACTGAAATTGGACCCT
GACTCAGATGATAACAATCAAGAGGCTCTGTCCTGCGTGTCTCTTGGAAGTACATCCCTG
AGTGGTCCCTCCATCTACTGCCCCTCCACTGCAGTCTGTAATGGCATCCTCCCAGGCTTG
GGCATCTAGTCTGGGATAGTGACTCTGAGTCCAGCTCATACAGCAAAGCACTCTCAGTGC
CATGGCCTAGATTGTCTCCTCCATCTCCCAAACCAACATCTTCCTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQQELIEKQRREEELKELKEYRISFNHVGISSENKKEVEKKVAVKPMETRNKFSQAKLLAGAVKHKSSESGNSVKRLKSDPDPDDKNQEALPCVSLGSAS
R.Q.L.EKQ.REE.LKE.KEY....N.VGIS.ENKKEVEK..AVKP..T.NKFSQA.LL.GA.KH.SSESG.SVKRLK.DPD.DD.NQEAL.CVSLGS.S
Retrocopy
RNQKLTEKQQREE-LKEMKEYKSNLNEVGISPENKKEVEK*LAVKPRGTKNKFSQAQLLPGALKHESSESGHSVKRLKLDPDSDDNNQEALSCVSLGSTS


Parental protein
LSAPSIHCPSAAVCIGILPGLGAYSG-SSDSESSSDS-EGTINATGKIVSSIFRTNTFL
LS.PSI.CPS.AVC.GILPGLG..SG..SDSESSS.S...T..A...IVSSI..TN.FL
Retrocopy
LSGPSIYCPSTAVCNGILPGLGI*SG/DSDSESSSYS/QSTLSAMA*IVSSISQTNIFL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide