RetrogeneDB ID:
retro_ecab_714
Organism:
Horse ( Equus_caballus )
Location:
3:39219756-39220578 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.78 %
Coverage:
97.86 %
Frameshifts:
4
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_714
AGGAGACAAAGGAATATGTTCCAAATAAGGGAACAGGACAGTTCCTCAGAAAAAGAGCTA
AACAAAACAGAGATAAACAATCTACTTGATAAAGAGTACAAACTAATACTCATAAGGATG
CTTACTGATCTGGGGAGAAGAATAGATGAACACAGTGAGAACTTCAACAAAGAACTAGAA
AATATGAAAAAGAACCAATCAGAGCTGAAGAATACAATAATGGAAATGAAAATTTCACTT
GAGGGAATCAACAGCAGAGTAGATGACACAGAAGAACTGATCAGCCATCTGGATGACAGA
GTAGAGGAAATAGCCTAAGCTGAACAGAAAAAAAGAAAAAAGAATTAAAAAAAATGAGGA
CAGTCTAAGGGACCTCTGGGACAACATCAAATGTATTAACACCTGCATTATAAATGTCCC
AGAAGGAAAAGAGAAAGACAAGGGGCACAGAACTTATTTGAAGAAATAATACCTGAAAAC
TTCCGTAACCTGAGAAAGGAAACAGATATCCAGGTACTGGAAACACCGAAAGCACCACAC
AAGATGAATCCAAAGAGGCCCACACCAAGACACATTATAATAAAAATGTCAAGAATTAAA
GATAAGGAGAGAATCCTAAAAGCTGCAAGAGACAAGCAATAAGTTACATACAAAACCCCC
CATAAATCTATAAGCTGACTTTTCAGCAGAAACTTTACAGGCTAGAAGGGAGTGGCACTA
TATACTCAAAGTGATGAAAGAAAAAACCTACCATCAAGAATACTGTACCTGGCAAGGTTA
TCATTCAGAATTGAAGGAGAGATAAAGAGATTTACAGATGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RRQRNMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLIDLGRRMDKHSENVNKELENIKKSQSEMKSTILKMKNSLEGLNSRVDDTEEWIKKLDEK
RRQRNMF..R.QD...EKELN.T...NL.DKE.K...IRML.DLGRR.D.HSEN.NKELEN.KK.QSE.K.TI..MK.SLEG.NSRVDDTEE.I..LD..
Retrocopy
RRQRNMFQIREQDSSSEKELNKTEINNLLDKEYKLILIRMLTDLGRRIDEHSENFNKELENMKKNQSELKNTIMEMKISLEGINSRVDDTEELISHLDDR


Parental protein
LEEIS-QVNQVKEKTILKNDSKIKELWDNIKHANIRIISVPGGEERHKGE-ENLFEEIIDENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIII-KMS
.EEI....N................LWDNIK..N..II.VP.G.E..KG...NLFEEII.ENF.NLRKETDIQV.E...AP.K..PKRPTP.HIII.K..
Retrocopy
VEEIA\KLNXXXXXXXXXXEDSLRDLWDNIKCINTCIINVPEGKEKDKGH/QNLFEEIIPENFRNLRKETDIQVLETPKAPHKMNPKRPTPRHIII\KCQ


Parental protein
KIKDKERILKAARERPEVTYKGKPIRLSADFSAETLQATREWHDIFKVLKGK-NLQPRIFYPSRSSFRMEGEIKRFPDK
..K......K...E.........PI.L.ADFSAETLQA.REWH.I.KV.K.K.NL..RI.Y..R.SFR.EGEIKRF.D.
Retrocopy
ELKIRRES*KL-QETSNKLHTKPPINL*ADFSAETLQARREWHYILKVMKEK/NLPSRILYLARLSFRIEGEIKRFTDE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide