RetrogeneDB ID:
retro_ecab_717
Organism:
Horse ( Equus_caballus )
Location:
3:57221283-57221970 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.98 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
NAA10
Parental gene aliases:
No gene alias available
Parental gene description:
N(alpha)-acetyltransferase 10, NatA catalytic subunit [Source:HGNC Symbol;Acc:18704]

Genomic region (view in browser)





>retro_ecab_717
ATGAACATCCGCAATGCTCGGCCCGACGACCTGATGAACATGCAGCACTGCAACCTCCTT
TGCCTTCCCGAGAACTACCAGATGAAATACTATTTCTACCACGGCCTTTCCTGGCCCCAG
CTCTCCTACATCGCTGAGGACGAGGACGGGAAGATCGTGGGCTACGTCCTGGCCAAAATG
GAGGAGGACCCAGACGATGTCCCCCATGGGCATATCACCTCGCTGGCCGTGAAGCGTTCC
CACCGGCGCCTCGGCCTGGCCCAGAAGCTAATGGACCAGGCCTCGCGGGCCATGATAGAG
AACTTTAGCGCCCAGTACGTGTCCCTACACGTCCGGAAGAGTAACCGGGCAGCCCTGCAC
CTCTATTCGAACACCCTCAACTTTCAGGTCAGTGAAGTGGAACCCAAATACTATGCAGAT
GGCGAAGATGCTTATGCTATGAAGCGGGATCTCGCGCAGATGGCAGATGAGCTGAGAAGG
CAGCTGGAGCAGAGGAAGGGCGGGTATGTGGTGGGCTCCAGGGAGAACCAGGAGACTCAG
GGCAGCACACATCCTGGTTCCGAAGGGGCCTGCCAGGAGCAGAAGATCTCTGCCGCCGAC
GATAGTGGCAGTGACAGTAAGGAGCCCAGCGAGTCCCCGGAGAGCACCGATGTCCAGGAC
AGCTCAGAAGACTCAGATTCCGCCTCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.17
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.0
SRP021940_testis 5.99

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKMEEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAMIE
MNIRNARP.DLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDE.GKIVGYVLAKMEEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAMIE
Retrocopy
MNIRNARPDDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDEDGKIVGYVLAKMEEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAMIE


Parental protein
NFNAKYVSLHVRKSNRAALHLYSNTLNFQISEVEPKYYADGEDAYAMKRDLTQMADELRRHLELKEKGRHMVLGSIENKVESKGNSLPSSGEACREEKGL
NF.A.YVSLHVRKSNRAALHLYSNTLNFQ.SEVEPKYYADGEDAYAMKRDL.QMADELRR.LE....G...V.GS.EN..E..G...P.S..AC.E.K..
Retrocopy
NFSAQYVSLHVRKSNRAALHLYSNTLNFQVSEVEPKYYADGEDAYAMKRDLAQMADELRRQLEQRKGG--YVVGSRENQ-ETQGSTHPGSEGACQEQKIS


Parental protein
AAEDSGGDSKDLSEVSETTESTDVKDSSEASDSAS
AA.DSG.DSK...E.SE..ESTDV.DSSE.SDSAS
Retrocopy
AADDSGSDSK---EPSESPESTDVQDSSEDSDSAS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide