RetrogeneDB ID:
retro_ecab_718
Organism:
Horse ( Equus_caballus )
Location:
3:60088974-60089562 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.72 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_718
CTTGAAGATAGGAACTTAGAAATGATGCATGTAGGAGAGGAAACAGTACTAAGATTTTTT
AAAAATGTAGAAATTCTATGAGAATTATCTGACTCCATTAGAAAAAGGCAACATAAGAAT
AATGGGTACCCCAGAAGGAGAAGAAAAAGAGAAGGTAGGAGAGAGCTTATTTAAAGAAAT
AATAGCTGAGAACTTCCCAAACATGGGGAAGGAACTGGACATACAAATTCATGAAGCTAA
TAGAACACCAAATTATCTCAACACAAAATGACCTTCTCCAAGACACATGATGATAAAACT
GTCAAAAGTCAATGACAGTGAAAGAATAAAGGCAGCCGGGGGGAAAAACAAGCTACAAGA
AACCCCCATTAGGCTATCAGCAGAGTTCTCAACATAAACTCTACCAGGAGAGAATGGAAT
GATATATTCAAAATACAGAAAGATAAAAACTGTCAGCCAAAAATACTGTATCCAGCACAG
TTATCTTTCAGATACAAAGGAGAAATAAAAACTTTCCCACACAAACAAAAGCTGAAAGAG
TTCATCATCACTAGACCTGCCTTACGAGAAATGGTGAAAGGAGCTCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LEDRNTEMLKMEEERELRLKRSEDIFQEIYNPIRKR-NIRIISIPTGEERQNRRESLFKEIITENFLNLGKGLEIQVKEANRTPNYINVERPSPRHILVK
LEDRN.EM....EE..LR......I..E....IRKR.NIRI...P.GEE.....ESLFKEII.ENF.N.GK.L.IQ..EANRTPNY.N...PSPRH...K
Retrocopy
LEDRNLEMMHVGEETVLRFFKNVEIL*ELSDSIRKR\NIRIMGTPEGEEKEKVGESLFKEIIAENFPNMGKELDIQIHEANRTPNYLNTK*PSPRHMMIK


Parental protein
LAKLVMKEYIMAEAARQKKITYKGSPIRLSADFS-QTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQEMMKTA
L.K....E.I.A.....K.......PIRLSA.FS.....TRREWNDI.KI.K.KN..P.ILYP..LSFRY..EIK.F..KQKL.EFI.TRP.L.EM.K.A
Retrocopy
LSKVNDSERIKAAGGKNK---LQETPIRLSAEFS/NINSTRREWNDIFKIQKDKNCQPKILYPAQLSFRYKGEIKTFPHKQKLKEFIITRPALREMVKGA


Parental protein
L
L
Retrocopy
L


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide