RetrogeneDB ID:
retro_ecab_719
Organism:
Horse ( Equus_caballus )
Location:
3:60625032-60625290 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
83.72 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
COX6B1
Parental gene aliases:
No gene alias available
Parental gene description:
cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) [Source:HGNC Symbol;Acc:2280]

Genomic region (view in browser)





>retro_ecab_719
ATGGCAGAAGACATTAAGACCAAAATCAAGAACTACCAGACTGCTGCTTTTGACAGCCAC
TTCCCCAACCAGAACCAGACCAGGAACTGCTGGCAGGACTATCTGGACTTCCACCGCTGT
GAGAAGGCAATGACTACTAAAGGAGGTGATGTCTCCATGTGCAAATAGTACCGGCATGTG
TACAAGTCCCTCTGCCCCGTATCCTGGGTGTCAGCCTGGCATGACTGCCAGGCAGAAGTC
ACATTTCCTGGGAAGATC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAEDIKSKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPLSWVSAWDDRRAEGTFPGKI
MAEDIK.KIKNYQTA.FDS.FPNQNQTRNCWQ.YLDFHRCEKAMT.KGGDVS.C..YR.VYKSLCP.SWVSAW.D..AE.TFPGKI
Retrocopy
MAEDIKTKIKNYQTAAFDSHFPNQNQTRNCWQDYLDFHRCEKAMTTKGGDVSMCK*YRHVYKSLCPVSWVSAWHDCQAEVTFPGKI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide