RetrogeneDB ID:
retro_ecab_72
Organism:
Horse ( Equus_caballus )
Location:
14:35675943-35676741 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
85.71 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_72
ATGCAGACGTTTCCCGCCCTGTACAAGGGCCTCACCGACTGCTGCCTCAAGACCTACTCC
CAAGTGGGCTTGCGGGGCTTCTACAAGGGGACTGGTCCAGCGCTCATTGCCTATGTCGCC
CAGAACTCGGTCCTCTTCATGTGCTACGGCTTCTGCCAACAGTTTGTGAGGAAAGTGGTT
GGACTGGACAAGCAGGCAAAACTGAGTGATCTGCAGACTGCAACCGCCGGTTCCTTCGCC
TCTGCGTTTGCTGCGCTCGCCCTGTGCCCCACTGAGCTTGTGAAGTGCCGGCTACAGACC
ATGCACGAAATGGAGATGTCAGGGAAGATAGCAAAAAGCCATAATACAGTTTGGTCCGTC
GTGAAGAGCATCCTTAGAAAGGATGGCCCCTTGGGCTTCTACCACGGACTCTCGAGCACT
CTAATTCAAGAAATACCGGGCTATTTCTTCTTCTTCGGTGGCTATGAACTGAGCCGATCG
TTTTTTGCCTCAGGGAGATCGAAAGATGAACTAGGCCCTGTCCCTTTGATGTTAAGTGGT
GGAATTGCTGGAATTTGCCTTTGGGGTGTCATATACCCAGTGGATTGTATCAAATCCAGA
ATTCAGGTTCTTTCCATATCTGGAAAACAGGCAGGATTTATCGGAACTCTTCTAAGTGTT
GTGAAAAATGAAGGAATAGCAGCCTTATATTCTGGACTGCAAGCTACTATGATTCGAGCG
TTCCCTGCCAATGGGGCACTATTTTTGGCTTATGAATACAGCAGGAAGATGATGATGGGC
CAGTTTGAAGCATACTAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.29
SRP021940_cerebellum 0.0
SRP021940_embryo 0.26
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.55
SRP021940_testis 9.02

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DLHNAAAGSFASAFAALVLCPTELVKCRLQTMYETQMSGKIAKSQNTVWSVVKSILRKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKD
DL..A.AGSFASAFAAL.LCPTELVKCRLQTM.E..MSGKIAKS.NTVWSVVKSILRKDGPLGFYHGLSSTL..E.PGYFFFFGGYELSRSFFASGRSKD
Retrocopy
DLQTATAGSFASAFAALALCPTELVKCRLQTMHEMEMSGKIAKSHNTVWSVVKSILRKDGPLGFYHGLSSTLIQEIPGYFFFFGGYELSRSFFASGRSKD


Parental protein
ELGPVPLMLSGGVGGICLWLAVYPVDCIKSRIQVLSMSGKQAGFLGTFITVVRNEGIMALYSGLKPTMIRAFPANGALFLAYEYSRRLMMSQFEAY
ELGPVPLMLSGG..GICLW...YPVDCIKSRIQVLS.SGKQAGF.GT...VV.NEGI.ALYSGL..TMIRAFPANGALFLAYEYSR..MM.QFEAY
Retrocopy
ELGPVPLMLSGGIAGICLWGVIYPVDCIKSRIQVLSISGKQAGFIGTLLSVVKNEGIAALYSGLQATMIRAFPANGALFLAYEYSRKMMMGQFEAY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide