RetrogeneDB ID:
retro_ecab_722
Organism:
Horse ( Equus_caballus )
Location:
3:67585869-67586391 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.67 %
Coverage:
59.79 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_722
AGTCTAAGGGATCTCTGGGACAACATCAAGCACACTAACATCCATATTATAGATGTCCTA
GAAGGAGAAGAGAGAAAGTAGCAGAGAAGTTACTTGAAGAAATAATAGCTGAAAACTTTC
CTAACCTAAGGAAGGAAACAGACATTCAGGTACAGGAAGCACAGAGAGCACCAAACAAGA
TGAACCCAAAGAGTCCCACACAAAGACACATTATAACTGAAATGTCAACAATTAAAGATA
AAGAGAGAATCCTAACAGCTGGAAGAGAAAAGCAACAGGTTACATACAAAAGAAACCCCA
TAAGGCTATCAGCTGACTTCTCAGCAGACATCTTACAGGCTTGAAGGGAGTGGCACGATA
TATTTAAAGTGATGAAAGCAAAACCTACAGCCAAGAATACTTTATCTGGCAAGGTTATCA
TTCAGAATGGAAGGAGAGATAAAGAGTTTTCCAGACAAGCAAAAACTAAATTTGTTTATC
ACCAAGAAGCTGGCCTTGTGAGAAATGTTAAAGGGACTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SLRDLWDNIKCTKIRITGV-PEEEGDKGAEIYLIKI-AENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRNKERILKAARERQQVTYKG
SLRDLWDNIK.T.I.I..V.P.....K.AE..L..I.AENFP.L.KE.D.QVQEAQ.APN..NPK..T.RHII...S.....KERIL.A.RE.QQVTYK.
Retrocopy
SLRDLWDNIKHTNIHIIDV/PRRRREKVAEKLLEEIIAENFPNLRKETDIQVQEAQRAPNKMNPKSPTQRHIITEMSTI-KDKERILTAGREKQQVTYKR


Parental protein
NSIRLSADLSAETLQARRKWHSIFKVLNRKKP-PRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
N.IRLSAD.SA..LQA.R.WH.IFKV...K...PRILYLAR.SF.MEGEIK.FPDKQKL..FITKK.AL.EMLKGLI
Retrocopy
NPIRLSADFSADILQA*REWHDIFKVMKAKPT\PRILYLARLSFRMEGEIKSFPDKQKLNLFITKKLAL*EMLKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide