RetrogeneDB ID:
retro_ecab_725
Organism:
Horse ( Equus_caballus )
Location:
3:69836628-69836787 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.7 %
Coverage:
76.81 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS28
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S28 [Source:HGNC Symbol;Acc:10418]

Genomic region (view in browser)





>retro_ecab_725
ATAGACACGAGCTGTGTGCAGCTCATCAAGCTGGCCTGGGTCACCAAGGTGCTAGGCAGG
ACTGGCTCACAGGAACAGCACACACAGGCGCCCATGGAATTCATGGACAACACAAGCTTC
TCCATCATCTGCAATGTGAAAGGCCCCATGAGCAAGGGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREG
.DTS.VQ.IKLA.VTKVLGRTGSQ.Q.TQ...EFMD.TS.SII.NVKGP...G
Retrocopy
IDTSCVQLIKLAWVTKVLGRTGSQEQHTQAPMEFMDNTSFSIICNVKGPMSKG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide