RetrogeneDB ID:
retro_ecab_726
Organism:
Horse ( Equus_caballus )
Location:
3:75220458-75221167 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.27 %
Coverage:
97.95 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
SFR1
Parental gene aliases:
No gene alias available
Parental gene description:
SWI5-dependent recombination repair 1 [Source:HGNC Symbol;Acc:29574]

Genomic region (view in browser)





>retro_ecab_726
GTACACCAGGATTTCATTTTCAAGATGGACAGCCCATCAGACTCAGCTATGGTTTCACGT
CGCACACCACAGGCTTGTGCCAGGTCACCGTCTCCCCATACCAGTAGTTCAAGAAAACAA
CCTATGAGTGCAACACTTAGAGAACGATTAAGGAAAACCAGATCTTCATTTAATTCCTGT
TACAGTATGGTAAAACGTCTCAAAGTAGAGAATGAAGATGATCAGAACCTTTCAGAGAAA
CCAGCAACTTCAGTAGAAGAAAACCGTGTGGAATTTCGAGAAGATTTTAAACACAGACAG
TGAATTTGAAGAAAATACGTATTTGAAAAATACCTTCGAGAATATCAATGCATGTGAATC
TGATTCACTCGATGCTGGGTCATGCAGTGAGGATCTCCAAAATGACTTTGTGAATGAGAA
TCTTCCCCAAAAAGGATTAAATGAAGAAAAAGCAAAATTGGTGAAGCAGATTCAGGAGAA
AGAGGACCTTCTTCAGAGGCTGAAACTAGTCAAAATGTACAGATCAAAGAATGACCTATC
TCAGTTACATTGTTAATAAAGAAGTGGAGAAGCTGTAGCCAGCTGTTGCTTTACGAGTTA
CAGTCAGCTGTCCGAGGAAAACAAGAAACTCAGCCTTACTCAGTTGATAGACTACTATGG
CTTAGATGATAAATTGCTACCCTATAACAGAAATGAAGAAGAATTTATA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VNQDFIFKMESPSDSAVISPGTPQACARPPSPHTSSSRKQPMSATLRERLRKTRSSFNSCYSVVKRLKVENEGDDQNFSEKPPTSVEENS-VEFREDVKR
V.QDFIFKM.SPSDSA..S..TPQACAR.PSPHTSSSRKQPMSATLRERLRKTRSSFNSCYS.VKRLKV..E..D.......P....E...V...E....
Retrocopy
VHQDFIFKMDSPSDSAMVSRRTPQACARSPSPHTSSSRKQPMSATLRERLRKTRSSFNSCYSMVKRLKV--ENEDDQNLSEKPATSVEEN\VWNFEKILN


Parental protein
IDSEFEENTSLKNTFKDISACESESLHAGSCSEDLQNDFVNEDLPREGLNEEKAKLVKQIQEKEDLLRRLKLVKMYRSKNDLSQLQ-LLIKRWRSCSQLL
.DSEFEENT.LKNTF..I.ACES.SL.AGSCSEDLQNDFVNE.LP..GLNEEKAKLVKQIQEKEDLL.RLKLVKMYRSKNDLSQL..LLIK.WRSCSQLL
Retrocopy
TDSEFEENTYLKNTFENINACESDSLDAGSCSEDLQNDFVNENLPQKGLNEEKAKLVKQIQEKEDLLQRLKLVKMYRSKNDLSQLH/LLIKKWRSCSQLL


Parental protein
LCELQSAL-SEENKKLSLTQLIDYYGLDDKLLHYNRNEEEFI
L.ELQSA...E..K.LSLTQLIDYYGLDDKLL.YNRNEEEFI
Retrocopy
LYELQSAV\EENKK-LSLTQLIDYYGLDDKLLPYNRNEEEFI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide