RetrogeneDB ID:
retro_ecab_728
Organism:
Horse ( Equus_caballus )
Location:
3:80132640-80132970 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.33 %
Coverage:
95.76 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL22L1
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L22-like 1 [Source:HGNC Symbol;Acc:27610]

Genomic region (view in browser)





>retro_ecab_728
AAGAAGTAGGTTCTGCAGTTCACCCTTGACTGCACCCACCCTGTAGAAGATGGAATCACG
GATGCTGCCAATTTCTTCAGGAAAGGATCAAAGTGACCAGAAATGCTTGGAATCTTGGTG
GAAGGATGTAACCACTTAAGGAGCAAGAGCAAGATTACCATCACTTCTGAGGTGTCTCTT
TCCAAAAGACGTTTGAAATATCTCACAAAAAAACATTTGAAGAAGACTAATTGATGTGAT
TGGTTGCATGTAGTTGCTAACAGCAAAGAGAGTTATGGATTATGTTACATCCGGATTAAC
CAGGATGAAGAAGAGGAGAAAGATGAGGAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KRSTWKFSLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYF
K.....F.LD.THPVEDGI.D..N...F.R...K.....G.L.......R.K.KIT..SE...SKR.LKYLTKK.LKK.N..DWL.VVA..KE.Y.L.Y.
Retrocopy
KK*VLQFTLDCTHPVEDGITDAAN---FFRKGSK*PEMLGILVEGCNHLRSKSKITITSEVSLSKRRLKYLTKKHLKKTN*CDWLHVVANSKESYGLCYI


Parental protein
QISQDEDESESED
.I.QDE.E...ED
Retrocopy
RINQDEEEEKDED


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide