RetrogeneDB ID:
retro_ecab_729
Organism:
Horse ( Equus_caballus )
Location:
3:81135273-81136016 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
98.39 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
CHTOP
Parental gene aliases:
No gene alias available
Parental gene description:
chromatin target of PRMT1 [Source:HGNC Symbol;Acc:24511]

Genomic region (view in browser)





>retro_ecab_729
ATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAAT
GAGCGCTTTACTAATATGCTGAAGAACAAACAGCCGATGCCAGTGAATATTCGAGCTTCG
ATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAG
AATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAGCTTAAAGCAGCGCCTAGGT
AAAAGTAACATCCAGGCACGGTTAGGCCGACCCACAGGGGCCCTGGCCAGGGGAGCAATC
GGAGGACGAGGCCTGCCCATAATCCAGAGAGGCTTGCCCAGAGGCGGACTACGTGGGGGA
CGTGCCACAAGAACCCTACTTAGGGGCGGGATGTCGCTCCGAGGTCAAAACCTGCTCCGA
GGTGGACAGCCGTAGCTCCCCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGTGGAG
GTCCTGGGAGAGGGGGCCTAGGGCGCGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAG
GTCGGGGTATGATAGGTCGGGGAAGAGGGGGCTTTGGAGGCAGAGGCAGAGGCCGTGGAC
GAGGGAGAGGTGCCCTTGCTCGCCCTGTACTGACCAAGGAGCAGCTGGACAACCAGTTGG
ATGCATACATGTCGAAAACGAAAGGACACCTGGATGCTGAGTTGGATGCCTACGTGGCAC
AGACAGATCCTGAAACCAATGAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.12
SRP021940_cerebellum 0.05
SRP021940_embryo 0.12
SRP021940_placental_villous 0.18
SRP021940_synovial_membrane 0.21
SRP021940_testis 0.95

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALKLKQSLKQRLGKSNIQARLGRPIGALARGAI
MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALKLKQSLKQRLGKSNIQARLGRP.GALARGAI
Retrocopy
MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALKLKQSLKQRLGKSNIQARLGRPTGALARGAI


Parental protein
GGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGR-AVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGR
GGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGG..AVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGR
Retrocopy
GGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGQ/AVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGR


Parental protein
GRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND
GRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAY.AQTDPETND
Retrocopy
GRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAYVAQTDPETND


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide