RetrogeneDB ID:
retro_ecab_729
Organism:
Horse ( Equus_caballus )
Location:
3:81135273-81136016 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
98.39 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
CHTOP
Parental gene aliases:
No gene alias available
Parental gene description:
chromatin target of PRMT1 [Source:HGNC Symbol;Acc:24511]
Genomic region (view in browser)
>retro_ecab_729
ATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAAT
GAGCGCTTTACTAATATGCTGAAGAACAAACAGCCGATGCCAGTGAATATTCGAGCTTCG
ATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAG
AATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAGCTTAAAGCAGCGCCTAGGT
AAAAGTAACATCCAGGCACGGTTAGGCCGACCCACAGGGGCCCTGGCCAGGGGAGCAATC
GGAGGACGAGGCCTGCCCATAATCCAGAGAGGCTTGCCCAGAGGCGGACTACGTGGGGGA
CGTGCCACAAGAACCCTACTTAGGGGCGGGATGTCGCTCCGAGGTCAAAACCTGCTCCGA
GGTGGACAGCCGTAGCTCCCCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGTGGAG
GTCCTGGGAGAGGGGGCCTAGGGCGCGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAG
GTCGGGGTATGATAGGTCGGGGAAGAGGGGGCTTTGGAGGCAGAGGCAGAGGCCGTGGAC
GAGGGAGAGGTGCCCTTGCTCGCCCTGTACTGACCAAGGAGCAGCTGGACAACCAGTTGG
ATGCATACATGTCGAAAACGAAAGGACACCTGGATGCTGAGTTGGATGCCTACGTGGCAC
AGACAGATCCTGAAACCAATGAT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.12 |
| SRP021940_cerebellum | 0.05 |
| SRP021940_embryo | 0.12 |
| SRP021940_placental_villous | 0.18 |
| SRP021940_synovial_membrane | 0.21 |
| SRP021940_testis | 0.95 |
Parental protein coverage
Changes in the retrocopy sequence
