RetrogeneDB ID:
retro_ecab_73
Organism:
Horse ( Equus_caballus )
Location:
4:50247718-50248675 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.77 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PRPS1
Parental gene aliases:
No gene alias available
Parental gene description:
phosphoribosyl pyrophosphate synthetase 1 [Source:HGNC Symbol;Acc:9462]

Genomic region (view in browser)





>retro_ecab_73
ATGCCAAATATAAAAATCTTCAGCGGCAGCTCCCACCAGGACTTATCCCAGAAAATTGCG
GACCGCCTGGGCCTGGAGCTAAGCAAGGTTATGACCAAGAAATTCACCAACCAGGAGACC
TGCGTGGACATTGGTGAGAGTGTGCATGGAGAGGATGTCTACATAGTGCAGAGTGGTTGT
GGTGAAATCAACGACAATCTAATGGAGCTTTTGATCATGATTAATGCCTGCAAGATTGCT
TCAGCCAGCCGGGTTACCGCAGTCATCCCGTGCTTCCCTTATGCCCGGCAGGATAAGAAG
GATGAGAATCGGGCCCCAATCTCTGCCAAGCTTGTTGCAAATATGCTGACTATAGCAGGT
GCAGATCATATCATCACCATGGACCTACATGCTTCTCAAATTCAAGGCTTTTTTGATATC
CCAGTAGACAACTTGTATGCAGAGCCCGCTGTCCTGAGGTGGATAAGGGAGAATATCTCT
GAGTGGAGGAACTGCATTATTGTCGCGCCAGATGCTGGTGGAGCCAAGAGAGTGACCTCC
ATTGCAGACAGATTGAATGTGGACTTTGCCTTGATTCACAAAGAACGGAAGAAGGCCAGC
AAAGTGGACCACATGGTGTTGGTGGGAGATGTGAAGGATCGTGTGGCTATCCTTGTGGAT
GACATAGCTGACACCTGTGGTACAATTTGCCATGCAGCTGACAAACTTCTCTCAGCCGGA
GCCACCAGAGTTTATGCCATCTTGACTCATGGAATCTTTTCTGGCCCAGCCATTACTCGC
ATCAACAGTGCGTGCTTGGAAGCAGTAGTGGTCACCAATACCATACCTCAGGAGGATAAG
ATGAAGCATTGCTCCAAAATACAGGTGATTGGCATCGCCATGATCCTTGCGGAAGCCATC
AGGAAAACTCACAATGGGGAATCTGTTTCCTACCTATTCAGCCATGTCCCTTTATAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.0
SRP021940_testis 31.69

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKK
MPNIKIFSGSSHQDLSQKIADRLGLEL.KV.TKKF.NQETCV.IGESV.GEDVYIVQSGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKK
Retrocopy
MPNIKIFSGSSHQDLSQKIADRLGLELSKVMTKKFTNQETCVDIGESVHGEDVYIVQSGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKK


Parental protein
DKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKAN
D..RAPISAKLVANML..AGADHIITMDLHASQIQGFFDIPVDNLYAEPAVL.WIRENISEWRNC.IV.PDAGGAKRVTSIADRLNVDFALIHKERKKA.
Retrocopy
DENRAPISAKLVANMLTIAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLRWIRENISEWRNCIIVAPDAGGAKRVTSIADRLNVDFALIHKERKKAS


Parental protein
EVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMRHCSKIQVIDISMILAEAI
.VD.MVLVGDVKDRVAILVDD.ADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAI.RIN.AC.EAVVVTNTIPQEDKM.HCSKIQVI.I.MILAEAI
Retrocopy
KVDHMVLVGDVKDRVAILVDDIADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAITRINSACLEAVVVTNTIPQEDKMKHCSKIQVIGIAMILAEAI


Parental protein
RRTHNGESVSYLFSHVPL
R.THNGESVSYLFSHVPL
Retrocopy
RKTHNGESVSYLFSHVPL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide