RetrogeneDB ID:
retro_ecab_731
Organism:
Horse ( Equus_caballus )
Location:
3:94406127-94406764 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.57 %
Coverage:
87.14 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_731
TCACTAGAGGGACTCAATAGCAGAGTAGATGATACAGAAGAATGGATCAGTAAACTGAAG
GACAGACTATAGGAAATCACCCAAGTTGAACAAGCAAAAGAGAAAATTACAAAGAATGAG
AAGAGTTGAAGGGAACTCTGGGACATTATCAAGCCTACTAACATTCATATTATAGGTGTC
CCAGAAGGAGAAGAGAGAGACAAAGGGGCAGAGAATCTATTTGAAGAAATAATAGCTGAA
AACTTTCCTAACCTAAGGAAGGAAATAGACATTCAAGTACAGTAAGCACAGAGAGCACCA
AACAAGATAAACCCAAAGAGGCCCACACCAAGACACATTATAATTAAAATCTCCAAAATT
AAAGATATAGAATCCTAAAGGCAGCAAGAGAAGTAAAACACGTGACATACAAAGGAAAGC
CCATAAGGCTATCAGCAGACATCTCAGCCAAAACCCTACGGCTGGAAGAGAGTGGCATGA
CTTATGTAAAGTGCTGACAGGAAAAAACCTACAGCCAAGAATACTCTATCCAGCAAGGTT
ATCATTCAGATCGGAAGGAGAGATAAAGAGTTTCCCAGACAAGCAAAAATTAAACGAGTT
TGTCACCAAGAATTCAGTTCTAAAAGAAATGTTGAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SLERLNSRVSDTHEQMSEIDERLEEISQAEQKKEKRIRQNENSLRELWDNIKCTNIRFIGVPEGEERDKEA----ENRVAENFPNLKKETDIHIQEAQRT
SLE.LNSRV.DT.E..S....RL.EI.Q.EQ.KEK.I..NE.S.RELWD.IK.TNI..IGVPEGEERDK.A....E...AENFPNL.KE.DI..Q.AQR.
Retrocopy
SLEGLNSRVDDTEEWISKLKDRL*EITQVEQAKEK-ITKNEKS*RELWDIIKPTNIHIIGVPEGEERDKGAENLFEEIIAENFPNLRKEIDIQVQ*AQRA


Parental protein
PKKISPKRATPRHIIIKISKMNDKER-IPRAARQKKISYKGTPIRLSVHFSTETLQ-ARRDWNDIFKTLKDKNLQPRILYPAKIFFRYEGEIKSFPDNQK
P.KI.PKR.TPRHIIIKISK..D.E.....A...K...YKG.PIRLS...S..TL..A.R.W.D..K.L..KNLQPRILYPA...FR.EGEIKSFPD.QK
Retrocopy
PNKINPKRPTPRHIIIKISKIKDIES/LKAAREVKHVTYKGKPIRLSADISAKTLR/AGREWHDLCKVLTGKNLQPRILYPARLSFRSEGEIKSFPDKQK


Parental protein
LRDFVATSPPLQEILK
L..FV.....L.E.LK
Retrocopy
LNEFVTKNSVLKEMLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide