RetrogeneDB ID:
retro_ecab_732
Organism:
Horse ( Equus_caballus )
Location:
3:95908992-95909434 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.0 %
Coverage:
88.62 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
PPIF
Parental gene aliases:
No gene alias available
Parental gene description:
peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259]

Genomic region (view in browser)





>retro_ecab_732
CTTGGGCTGCATCTTCTTCAAGCTGTTTGCAGAAAAGTTCCAAAGACAGCAGAAAACTTT
CGTACTCTGAGCAGTGAGGAGAAAGGATTTGGTTATAAAGTTTCCTGCCTTAACAGAATT
ATTCCAGGATTTATATGCCAGAGTGGTGACTTCACACGCCATAATGGCACTGGCGACAAG
TCCATCTGTGGGGAGAAATTTGATGATGAGAATTTCATCCTGAAGCATACGTGTCCTGGC
ATCATGTCCATGACAAATATTGGACCCAACACAAATGGTTCCCAGTTTTTCACCTGCACT
GCCAACACTGAGTGGTTGGATGGCAAGCCTGTGGTCTTTGGCAAAGTGAAAGAGGGCATG
AATATCGTGGAAACATGGAGCCTTTGGGTCCAGGATTCGCAAGACCAGCAAAAAGATCAC
CACTGCTGACTGAGGACAAATC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.3
SRP021940_embryo 0.53
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.36
SRP021940_testis 0.36

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LGRVVLELNADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICT
LG...L......VPKTAENFR.L...EKGFGYK.S...R.IP.F.CQ.GDFT.HNGTG.KSI.G..F.DENF.LKH..PG..SM.N.GPNTNGSQFF.CT
Retrocopy
LGLHLLQAVCRKVPKTAENFRTLSSEEKGFGYKVSCLNRIIPGFICQSGDFTRHNGTGDKSICGEKFDDENFILKHTCPGIMSMTNIGPNTNGSQFFTCT


Parental protein
IKTDWLDGKHVVFGHVKEGMDVVK-KIESFG-SKSGKTSKKIVITDCGQL
..T.WLDGK.VVFG.VKEGM..V....E..G.S...KTSKKI...D.GQ.
Retrocopy
ANTEWLDGKPVVFGKVKEGMNIVE/NMEPLG/SRIRKTSKKITTAD*GQI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide