RetrogeneDB ID:
retro_ecab_733
Organism:
Horse ( Equus_caballus )
Location:
3:97063978-97064353 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
89.6 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_733
ATGGCAATGCAAGCTGCCAAGAGGGCGAACATTCGACTTCCACTTGAAGTAAACCGGGTT
TTGTATATAAGAAATTTGCCGTGCAAAATCACAGCTGAAGAAATGTATGATATATTTGGA
AAATATAGACCTACTCGTCAAATCAGAGTGGGGAACACACCTGAAACTAGGGGAACAGTT
TATGTGGTCTATGAAGACGTCTTTGATGCCAAGAACACGTGTGATCACCTGTCAGGATTC
AATGTGTGTAACAGATACCTTGCGGTTTTGTACTATAGTGCTAACAGGGCATTTCAGAAG
ATGGGCACAAAGGAGAAGGAAGAACAGTTGAAGCTTCTCGAAGAGAAATATGGCATCAAC
ACAGATCCACCAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQK
MAMQAAKRANIRLP.EVNR.LYIRNLP.KITAEEMYDIFGKY.P.RQIRVGNTPETRGT.YVVYED.FDAKN.CDHLSGFNVCNRYL.VLYY.ANRAFQK
Retrocopy
MAMQAAKRANIRLPLEVNRVLYIRNLPCKITAEEMYDIFGKYRPTRQIRVGNTPETRGTVYVVYEDVFDAKNTCDHLSGFNVCNRYLAVLYYSANRAFQK


Parental protein
MDTKKKEEQLKLLKEKYGINTDPPK
M.TK.KEEQLKLL.EKYGINTDPPK
Retrocopy
MGTKEKEEQLKLLEEKYGINTDPPK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide